Table 3.
Estimates of autosomal heritability for androstenone
| Chr | h2 autosome | se | p-val | h2 polygenic | se |
|---|---|---|---|---|---|
| 1 | 0 | 0.04 | 1 | 0.38 | 0.06 |
| 2 | 0.02 | 0.02 | 0.16 | 0.33 | 0.06 |
| 3 | 0.02 | 0.02 | 0.16 | 0.34 | 0.06 |
| 4 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 5 | 0.06 | 0.03 | 0.00051 | 0.29 | 0.06 |
| 6 | 0 | 0.03 | 1 | 0.37 | 0.06 |
| 7 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 8 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 9 | 0 | 0.02 | 1 | 0.37 | 0.06 |
| 10 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 11 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 12 | 0 | 0.02 | 0.38 | 0.35 | 0.06 |
| 13 | 0.02 | 0.02 | 0.21 | 0.33 | 0.06 |
| 14 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 15 | 0 | 0.02 | 0.36 | 0.35 | 0.06 |
| 16 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 17 | 0 | 0.02 | 1 | 0.36 | 0.06 |
| 18 | 0 | 0.01 | 1 | 0.36 | 0.06 |
Testing strategy was to compare fitting a random polygenic effect (based on a GRM estimated using all genotyped SNPs across the genome) plus a random effect for variance attributed to SNPs from a single autosome with a reduced model fitting only the random polygenic effect. P-val is the corresponding p value based on the distribution of the LRT being between χ2 1 and a point mass of zero. h2 autosome is an estimate of the heritability of the autosome, h2 polygenic is an estimate of the heritability from the entire genome.