Table 1.
Phylogenetic affiliation of representative bacterial isolates from the gut of R. ferrugineus larvae as assigned by the Naïve Bayesian rRNA Classifier Version 2.4, of the Ribosomal Database Project II (RDP) and EMBL/SwissProt/GenBank non-redundant nucleotide database BLAST analysis
| OTU | Phylum | Class | Family | N. of isolates in the OTU | Isolate | Most closely related sequence (MegaBLAST) | Genbank acc. N. | ID% |
|---|---|---|---|---|---|---|---|---|
| A |
Proteobacteria |
Betaproteobacteria |
Comamonadaceae |
4 |
RPWA5.3 |
Comamonas nitrativorans strain 23310 |
NR025376.1 |
98 |
| B |
|
Gammaproteobacteria |
Enterobacteriaceae |
5 |
RPWA3.3 |
Budvicia aquatica strain Eb 13/82 |
NR025332.1 |
98 |
| |
|
|
|
|
RPWC1.3 |
Uncultured bacterium clone J44 |
GQ451198.1 |
99 |
| C |
|
|
|
10 |
RPWA2.8 |
Citrobacter koseri strain LMG 5519 |
HQ992945.1 |
99 |
| D |
|
|
|
3 |
RPWC2.4 |
Citrobacter koseri complete genome ATCC BAA-895 |
CP000822.1 |
99 |
| E |
|
|
|
1 |
RPWC1.2 |
Uncultured bacterium clone MFC4P_173 |
JF309179.1 |
99 |
| F |
|
|
|
9 |
RPWB1.1 |
Klebsiella oxytoca strain LF-1 |
EF127829.1 |
99 |
| |
|
|
|
|
RPWA1.1 |
Klebsiella oxytoca strain NFL28 |
GQ496663.1 |
99 |
| |
|
|
|
|
RPWA1.5 |
Klebsiella sp. 2392 |
JX174269.1 |
93 |
| |
|
|
|
|
RPWC4.3 |
Klebsiella sp. Co9935 |
DQ068764.1 |
99 |
| G |
|
|
|
1 |
RPWC2.2 |
Proteus sp. LS9(2011) |
JN566137.1 |
99 |
| H |
|
|
|
1 |
RPWA1.6 |
Salmonella enterica subsp. arizonae serovar 62:z4,z23, |
CP000880.1 |
99 |
| I |
|
|
Xanthomonadaceae |
1 |
RPWC3.1 |
Stenotrophomonas sp. DD7 |
JQ435720 |
99 |
| J |
Firmicutes |
Bacilli |
Bacillaceae |
9 |
RPWA4.1 |
Bacillus muralis strain cp5 |
JN082264.1 |
99 |
| |
|
|
|
|
RPWB1.3 |
Bacillus sp. 4014 |
JX566611 |
99 |
| |
|
|
|
|
RPWB1.4 |
Bacillus sp. DP5(2011) |
JF825992.1 |
99 |
| RPWB3.2 | Bacillus megaterium strain NBRC 12068 | AB680229.1 | 99 |