Figure 5. Consistency of different peak-calling methods.

OccuPeak, MACS and CisGenome were used to call peaks for each of the two replicate p300 ChIP-seq experiments generated by the ENCODE consortium (GSE29184). A. Peaks are considered common (green) if they were identified in both replicates and singleton if they were only found in the current replicate (yellow and blue), as depicted in the UCSC genome browser example (B).