Table 1. Datasets.
| ChIP-seq | ||||
| Dataset | Study organism | Sequencing platform | Coverage (proportion of genome covered by peaks) | GEO DataSets (GSE) |
| TBX3 heart over-expression | mouse | AB SOLiD System 3.0 | 0.0847 | GSE44821 |
| p300 heart(1) | mouse | Illumina Genome Analyzer II | 0.0494 | GSE29184 |
| p300 heart(2) | mouse | Illumina Genome Analyzer II | 0.0538 | GSE29184 |
| Srf | mouse | Illumina Genome Analyzer | 0.0005 | GSE21529 |
| Mef2a | mouse | Illumina Genome Analyzer | 0.0005 | GSE21529 |
| Input-seq | ||||
| Input control heart(1) | mouse | Illumina Genome Analyzer II | 0.0003 | GSE29184 |
| Input control heart (2) | mouse | Illumina Genome Analyzer II | 0.0003 | GSE29184 |
| Input control lung(1) | mouse | Illumina Genome Analyzer II | 0.0001 | GSE29184 |
| Input control lung(2) | mouse | Illumina Genome Analyzer II | 0.0004 | GSE29184 |
| IgG | ||||
| IgG control atria | mouse | Illumina HiSeq 1000 | - | GSE46497 |
| IgG control MEL | mouse | Illumina Genome Analyzer | - | GSE49847 |
| Reference data | ||||
| H3K27ac heart | mouse | Illumina HiSeq 2000 | 0.0236 | GSE49847 |
| DNase1 hypersensitivity sites heart | mouse | Illumina HiSeq 2000 | 0.0964 | GSE40869 |
| Validated enhancers | mouse | - | - | - |
| Validated cardiac enhancers | mouse | - | - | - |
| Cardiac gene promoters | mouse | - | - | - |
A summary of the datasets used in this study. For ChIP-seq datasets, the sequencing platform, the coverage of the genome by peaks and the GEO DataSets accession number (GSE) is given. The coverage of the genome by peaks is given relative to mappable genome size (1.87 Gb for mm9).