Table 2. Missense changes found in the coding region of the BMPR2, ACVRL1 and KCNA5 genes and their classification according to three different computer algorithms (PolyPhen-2, Pmut and SIFT).
CLASSIFICATION MISSENSE VARIATIONS FOUND IN THE CODING REGION OF GENES | |||||||
Gene | Nucleotide change | Amino-acid change | Times founded | PolyPhen-2 | Pmut | Sift | Score |
BMPR2 (Exon 2) | c.190A>C | p.(S64G) | 1 | Benign | Neutral | Tolerated | 0 |
BMPR2 (Exon 2) | c.229A>T | p.(I77L) | 1 | Benign | Neutral | Damaging | 1 |
BMPR2 (Exon 3) | c.251G>T | p.(C84F) | 2 | Probably damaging | Neutral | Damaging | 2 |
BMPR2 (Exon 3) | c.259C>T | p.(H87Y) | 1 | Benign | Neutral | Damaging | 1 |
BMPR2 (Exon 3) | c.275A>T | p.(Q92L) | 1 | Benign | Pathologic | Damaging | 2 |
BMPR2 (Exon 4) | c.484G>C | p.(A162P) | 1 | Probably damaging | Neutral | Damaging | 2 |
BMPR2 (Exon 6) | c.790G>A | p.(D264N) | 1 | Possibly damaging | Neutral | Damaging | 2 |
BMPR2 (Exon 8) | c.1021G>A | p.(V341M) | 3 | Possibly damaging | Neutral | Damaging | 2 |
BMPR2 (Exon 12) | c.2324G>A | p.(S775N) | 2 | Benign | Neutral | Tolerated | 0 |
ACVRL1 (Exon 2) | c.24A>T | P(.K8N) | 1 | Benign | Neutral | Tolerated | 0 |
ACVRL1 (Exon 3) | c.176A>T | p.(E59V) | 1 | Benign | Neutral | Tolerated | 0 |
ACVRL1 (Exon 4) | c.476A>T | p.(E159V) | 1 | Benign | Neutral | Tolerated | 0 |
ACVRL1 (Exon 6) | c.673A>T | p.(S225C) | 1 | Probably Damaging | Pathological | Damaging | 3 |
ACVRL1 (Exon 8) | c.1186A>G | p.(T396A) | 8 | Benign | Neutral | Tolerated | 0 |
KCNA5 (Exon 1) | c.125T>A | p.(L42H) | 1 | Benign | Neutral | Tolerated | 0 |
KCNA5 (Exon 1) | c.253C>A | p.(L85M) | 1 | Benign | Neutral | Tolerated | 0 |
KCNA5 (Exon 1) | c.340A>C | p.(T114P) | 1 | Benign | Neutral | Tolerated | 0 |
KCNA5 (Exon 1) | c.385C>G | p.(L119V) | 2 | Benign | Neutral | Damaging | 1 |
KCNA5 (Exon 1) | c.509C>G | p.(P170R) | 1 | Probably Damaging | Pathological | Damaging | 3 |
KCNA5 (Exon 1) | c.551G>C | p.(R184P) | 1 | Probably Damaging | Pathological | Damaging | 3 |
KCNA5 (Exon 1) | c.1733G>A | p.(R577K) | 1 | Benign | Neutral | Tolerated | 0 |
These results are considered damaging if the score is equal or greater than two.