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. 2014 Jun 17;9(6):e100261. doi: 10.1371/journal.pone.0100261

Table 2. Missense changes found in the coding region of the BMPR2, ACVRL1 and KCNA5 genes and their classification according to three different computer algorithms (PolyPhen-2, Pmut and SIFT).

CLASSIFICATION MISSENSE VARIATIONS FOUND IN THE CODING REGION OF GENES
Gene Nucleotide change Amino-acid change Times founded PolyPhen-2 Pmut Sift Score
BMPR2 (Exon 2) c.190A>C p.(S64G) 1 Benign Neutral Tolerated 0
BMPR2 (Exon 2) c.229A>T p.(I77L) 1 Benign Neutral Damaging 1
BMPR2 (Exon 3) c.251G>T p.(C84F) 2 Probably damaging Neutral Damaging 2
BMPR2 (Exon 3) c.259C>T p.(H87Y) 1 Benign Neutral Damaging 1
BMPR2 (Exon 3) c.275A>T p.(Q92L) 1 Benign Pathologic Damaging 2
BMPR2 (Exon 4) c.484G>C p.(A162P) 1 Probably damaging Neutral Damaging 2
BMPR2 (Exon 6) c.790G>A p.(D264N) 1 Possibly damaging Neutral Damaging 2
BMPR2 (Exon 8) c.1021G>A p.(V341M) 3 Possibly damaging Neutral Damaging 2
BMPR2 (Exon 12) c.2324G>A p.(S775N) 2 Benign Neutral Tolerated 0
ACVRL1 (Exon 2) c.24A>T P(.K8N) 1 Benign Neutral Tolerated 0
ACVRL1 (Exon 3) c.176A>T p.(E59V) 1 Benign Neutral Tolerated 0
ACVRL1 (Exon 4) c.476A>T p.(E159V) 1 Benign Neutral Tolerated 0
ACVRL1 (Exon 6) c.673A>T p.(S225C) 1 Probably Damaging Pathological Damaging 3
ACVRL1 (Exon 8) c.1186A>G p.(T396A) 8 Benign Neutral Tolerated 0
KCNA5 (Exon 1) c.125T>A p.(L42H) 1 Benign Neutral Tolerated 0
KCNA5 (Exon 1) c.253C>A p.(L85M) 1 Benign Neutral Tolerated 0
KCNA5 (Exon 1) c.340A>C p.(T114P) 1 Benign Neutral Tolerated 0
KCNA5 (Exon 1) c.385C>G p.(L119V) 2 Benign Neutral Damaging 1
KCNA5 (Exon 1) c.509C>G p.(P170R) 1 Probably Damaging Pathological Damaging 3
KCNA5 (Exon 1) c.551G>C p.(R184P) 1 Probably Damaging Pathological Damaging 3
KCNA5 (Exon 1) c.1733G>A p.(R577K) 1 Benign Neutral Tolerated 0

These results are considered damaging if the score is equal or greater than two.