Table 4.
Detail breakdown of the seed sequence classification of 9 Pfam and 4 SMART domains with positive concordance rate of < 90%
| Pfam/SMART domains | Domain length | Positive concordance/Total discordance | Total common hits | Orphaned hits HMMER2/3 | Positive concordance (%) | Total discordance (%) |
|---|---|---|---|---|---|---|
| PF00433.19 Pkinase_C |
159 |
108/89 |
197 |
55/0 |
54.82 |
45.18 |
| PF01426.13 BAH |
349 |
53/10 |
63 |
4/0 |
84.13 |
15.87 |
| PF02098.11 His_binding |
296 |
19/4 |
23 |
0/0 |
82.61 |
17.39 |
| PF02965.12 Met_synt_B12 |
309 |
14/2 |
16 |
0/0 |
87.50 |
12.50 |
| PF05594.9 Fil_haemagg |
160 |
122/16 |
138 |
17/0 |
88.41 |
11.59 |
| PF10590.4 PNPOx_C_seed |
112 |
268/73 |
341 |
0/0 |
78.59 |
21.41 |
| PF11736.3 DUF3299 |
235 |
79/13 |
92 |
0/0 |
85.87 |
14.13 |
| PF13894.1 zf-C2H2_4 |
105 |
2/5 |
7 |
577/0 |
28.57 |
71.43 |
| PF15612.1 WHIM1 |
66 |
29/4 |
33 |
3/0 |
87.88 |
12.12 |
| SM00185 ARM |
66 |
128/34 |
162 |
7/0 |
79.01 |
20.99 |
| SM00304 HAMP |
122 |
79/50 |
129 |
91/0 |
61.24 |
38.76 |
| SM00320 WD40 |
119 |
580/137 |
717 |
1055/0 |
80.89 |
19.11 |
| SM00733 Mterf | 49 | 115/39 | 155 | 90/0 | 74.19 | 25.16 |