Table 3. List of upregulated genes unique to C. amada during infection with R. solanacearum.
| Gene ID | Functional annotation | Fold change* | P | FDR P |
| gi|639722|gb|AAA61682.1| calcium-dependent protein kinase | calcium-dependentprotein kinase | 89.22 | 0.00E+00 | 0.00E+00 |
| gi|224482647|gb|ACN50180.1| enolase | enolase | 73.00 | 0.00E+00 | 0.00E+00 |
| gi|211906504|gb|ACJ11745.1| heat shock protein 70 | heat shock protein 70 | 61.10 | 0.00E+00 | 0.00E+00 |
| gi|165967914|gb|ABY75803.1| resistance gene candidateNBS-type protein | resistance gene candidateNBS-type protein | 42.50 | 3.13E−10 | 2.21E−09 |
| gi|60657598|gb|AAX33320.1| secondary cell wall-relatedglycosyltransferase family 47 | secondary cell wall-relatedglycosyltransferase family 47 | 45.50 | 6.76E−11 | 5.07E−10 |
| gi|225429646|ref|XP_002281111.1| PREDICTED: thermosperminesynthase ACAULIS5 | thermospermine synthaseACAULIS5 | 368.00 | 0.00E+00 | 0.00E+00 |
| gi|225458880|ref|XP_002283423.1| PREDICTED: 70 kDapeptidyl-prolyl isomerase | 70 kDa peptidyl-prolylisomerase | 128.50 | 0.00E+00 | 0.00E+00 |
| gi|38492172|gb|AAR22388.1| ANT-like protein | ANT-like protein | 132.50 | 0.00E+00 | 0.00E+00 |
| gi|242085822|ref|XP_002443336.1| hypothetical proteinSORBIDRAFT_08g017740 | carboxylesterase activity | 115.50 | 0.00E+00 | 0.00E+00 |
| gi|224108908|ref|XP_002333333.1| predicted protein | fructose-bisphosphate aldolaseactivity | 3901.00 | 0.00E+00 | 0.00E+00 |
| gi|224056583|ref|XP_002298922.1| predicted protein | hydroxyacylglutathionehydrolase activity | 218.00 | 0.00E+00 | 0.00E+00 |
| gi|115463087|ref|NP_001055143.1| Os05g0304600 | Lipoxygenase | 137.00 | 2.22E−16 | 2.51E−15 |
| gi|8118507|gb|AAF73006.1|AF262997_1 NADP-dependentmalic protein | malate dehydrogenase(oxaloacetate-decarboxylating)activity | 106.00 | 0.00E+00 | 0.00E+00 |
| gi|224137878|ref|XP_002322674.1| predicted protein | protein serine/threonine kinaseactivity | 196.00 | 0.00E+00 | 0.00E+00 |
| gi|226509426|ref|NP_001149968.1| LOC100283595 | pyridoxine:NADP 4-dehydrogenaseactivity | 78.00 | 9.02E−10 | 6.11E−09 |
| gi|209167918|gb|ACI41983.1| putative pyruvate decarboxylase 1 | pyruvate decarboxylase activity | 55.75 | 0.00E+00 | 0.00E+00 |
| gi|79314589|ref|NP_001030828.1| RING/U-box domain-containingprotein | RING/U-box domain-containingprotein | 129.00 | 2.00E−15 | 2.13E−14 |
| gi|297746005|emb|CBI16061.3| unnamed protein product | tropine dehydrogenase activity | 271.00 | 0.00E+00 | 0.00E+00 |
| gi|222637669|gb|EEE67801.1| hypothetical protein OsJ_25542 | ubiquitin-protein ligase activity | 79.00 | 0.00E+00 | 0.00E+00 |
*Fold-change between C. amada and Z. officinale, using fold-regulation cutoff of >40.0, P<0.005, FDR P at 0.05%.