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| Transcription Factors family | Number of genes detected | Up-regulated in C. amada | Up-regulated in Z. officinale |
| WRKY | 8 | 4 | 4 |
| MYB | 6 | 4 | 2 |
| AP2/ERF | 2 | 2 | - |
| MYC | 1 | 1 | - |
| GRAS | 1 | 1 | 8 |
| Zinc finger | 17 | 9 | 1 |
| bHLH | 1 | − | 1 |
| bZIP | 3 | 2 | 4 |
| Others | 15 | 11 | 16 |
| Total | 54 | 34 | 20 |
