Table 4. Association and Dissociation Rate Constants (kon and koff, Respectively) That Describe the Interactions between Different Ligands and ecDHFR Species (l-, Light DHFR; h-, Heavy DHFR), As Measured by Rapid Mixing of the Ligand with ecDHFR or a Binary Complex at 25 °C, pH 7.
ligand | enzyme species | kon (μM–1 s–1) | koff (s–1) | Kd = koff/kon (μM) | ||
---|---|---|---|---|---|---|
(a) | NADPH | DHFR | l- | 17.3 ± 0.4 | 3 ± 2a | 0.18 ± 0.09 |
h- | 16.8 ± 0.4 | 5 ± 2a | 0.28 ± 0.09 | |||
(b) | DHF | DHFR | l- | 41.0 ± 0.5 | 54 ± 4 | 1.3 ± 0.1 |
h- | 30.1 ± 0.6 | 113 ± 6 | 3.8 ± 0.2 | |||
(c) | DHFR·NADP+ | l- | 42.1 ± 0.5 | 10 ± 3 | 0.24 ± 0.07 | |
h- | 38.5 ± 0.6 | 11 ± 4 | 0.3 ± 0.1 | |||
(d) | FA | DHFR | l- | 34.3 ± 0.4 | 110 ± 3 | 3.22 ± 0.09 |
h- | 35.9 ± 0.5 | 125 ± 4 | 3.5 ± 0.1 | |||
(e) | DHFR·NADPH | l- | 5.9 ± 0.1 | 90.0 ± 0.8 | 15.2 ± 0.3 | |
h- | 6.0 ± 0.1 | 91.7 ± 0.8 | 15.4 ± 0.3 | |||
(f) | methotrexate | DHFR | l- | 28.4 ± 0.3 | 2.0 ± 0.6 | 0.07 ± 0.02 |
h- | 28.1 ± 0.4 | 1.9 ± 0.6 | 0.07 ± 0.02 | |||
(g) | DHFR·NADPH | l- | 52.2 ± 0.4 | –0.7 ± 0.7b | –0.01 ± 0.01 | |
h- | 47.2 ± 0.4 | 0.9 ± 0.8b | 0.02 ± 0.02 |
Small differences within the limits of experimental error may exist for koff of NADPH between l- and h-DHFR.
The koff for methotrexate dissociating from the DHFR·NADPH·methotrexate ternary complex cannot be accurately determined by this method.