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. Author manuscript; available in PMC: 2015 May 1.
Published in final edited form as: Hum Genet. 2013 Nov 5;133(5):481–497. doi: 10.1007/s00439-013-1383-3

Figure 3.

Figure 3

Forest plot of the study specific and summary odds ratios and 95% confidence intervals for the association between low malignant potential serous ovarian cancer risk and one SNP nominated by our pool-based GWAS, rs9609538. Study-specific odds ratios, 95% confidence intervals, and P-values are based on logistic regression assuming an additive genetic model, adjusting for the first 5 eigenvalues from principal components analysis. Summary odds ratios and 95% confidence intervals are from fixed effects meta-analysis and include the OVA study site. Forest plots were generated using the rmeta library implemented in the R project; association analyses were performed using PLINK. The MDA and TOR study sites are not plotted; neither study had any LMP serous ovarian cancer cases or controls