. Author manuscript; available in PMC: 2015 May 1.

Published in final edited form as: Hum Genet. 2013 Nov 5;133(5):481–497. doi: 10.1007/s00439-013-1383-3

Table 2. Number of pool-based GWAS SNPs selected for replication by EOC subtype.

Subtype	SNP selection method^a	# SNPs chosen	# SNPs successfully genotyped	# Independent tests of association
Mucinous	Cluster	48	43	43
Mucinous	Singleton	13	13	43

Endometrioid/Clear cell	Cluster	46	43	42
Endometrioid/Clear cell	Singleton	13	12	42

LMP Serous	Cluster	41	40	43
LMP Serous	Singleton	13	13	43

Invasive Serous	Cluster	24	24	15
Invasive Serous	Singleton	0	0	15

Total		198	188	--

Cluster refers to SNPs chosen based on P-value and their being in linkage disequilibrium (LD) with other GWAS SNPs having a small P-value. Singleton refers to SNPs not in LD with other GWAS SNPs, and chosen based on P-value alone. See Methods for details.