Table 2.

Comparison of bootstrap 95% percentile confidence interval of average F-measure of different versions of HFold when given SimFold structure as input vs. when given HotKnots hotspots structures as input

Input	Hotspots			SimFold (MFE)
	PKonly	HFold	Iter. HFold	PKonly	HFold	Iter. HFold
HK-PK	(55.54, 71.06)	(73.35, 83.53)	(72.83, 83.37)	(50.57, 63.53)	(50.69, 63.54)	(51.42, 64.39)
HK-PK-free	(31.37, 38.52)	(75.53, 80.79)	(74.93, 80.26)	(78.42, 83.21)	(78.33, 83.27)	(78.31, 83.17)