Table 2.
Genomotyping results of N. gonorrhoeae strain FA1090 versus N. gonorrhoeae strain FA19.
| Gene probes hybridizing to FA1090 but not FA19 | |
| Genes known to be associated with divergence: | Lack of hybridization may be due to: |
| XNG0049 (pilC1) | divergence in FA19 pilC sequence |
| XNG0211 (hypothetical) | maf-associated divergence |
| XNG0212 (hypothetical) | maf-associated divergence |
| XNG0213 (hypothetical) | maf-associated divergence |
| XNG1848 (hypothetical) | maf-associated divergence |
| XNG0458 (hypothetical) | prophage region-associated divergence |
| XNG0459 (regulator) | prophage region-associated divergence |
| XNG0460 (hypothetical) | prophage region-associated divergence |
| XNG0461 (regulator) | prophage region-associated divergence |
| XNG0462 (hypothetical) | prophage region-associated divergence |
| XNG1006 (hypothetical) | prophage region-associated divergence |
| XNG1509 (hypothetical) | prophage region-associated divergence |
| Genes associated with strain-specific regions: | Associated strain-specific region: |
| XNG0438 (hypothetical) | pilin-AzlC MME |
| XNG0741 (hypothetical) | ung-hypo MME |
| XNG0528 (hypothetical) | hypo-aspA MME |
| XNG0529 (hypothetical) | hypo-aspA MME |
| XNG1114 (hypothetical) | uvrA-hypo MME |
| XNG1115 (methylase) | uvrA-hypo MME |
| XNG1441 (hypothetical) | nadC-xthA MME |
| Gene probes hybridizing to FA19 but not FA1090 | |
| Genes known to be associated with divergence | Hybridization to non-FA1090 probes may be due to: |
| NMB1541 (lbpB) | lbpB is known to be dead in FA1090 (AF072890) |
| NMA0036 (hypothetical) | maf-associated divergence |
| NMB2109 (hypothetical) | maf-associated divergence |
| NMB2110 (hypothetical) | maf-associated divergence |
| NMA1360 (hypothetical) | the presence of a sequenced gene fragment in FA19 |
| NMB1119 (hypothetical) | prophage region-associated divergence |
| NMB1120 (hypothetical) | prophage region-associated divergence |
| GCJDS60 (suppressor) | prophage region-associated divergence |
| GCJDS61 (regulator) | prophage region-associated divergence |
| Genes associated with strain-specific regions: | Associated strain-specific region: |
| NMA2121 (hypothetical) | hypo-hypo MME |
| 59 Gonococcal Genetic Island genes | ung-hypo MME |