SAMPLE | sample name in which CNV was called |
CNV | type of copy number variation (DEL or DUP) |
INTERVAL | genomic range of the called CNV |
KB | length in kilobases of called CNV |
CHR | chromosome name on which CNV falls |
MID_BP | the midpoint of the CNV (to have one genomic number for plotting a single point, if desired) |
TARGETS | the range of the target indices over which the CNV is called (NOTE: considering only the FINAL set of post-filtering targets) |
NUM_TARG | # of exome targets of the CNV |
Q_EXACT | Phred-scaled quality of the exact CNV event along the entire interval - Identical to EQ in .vcf output from genotyping |
Q_SOME | Phred-scaled quality of some CNV event in the interval - Identical to SQ in .vcf output from genotyping |
Q_NON_DIPLOID | Phred-scaled quality of not being diploid, i.e., DEL or DUP event in the interval - Identical to NDQ in .vcf output from genotyping |
Q_START | Phred-scaled quality of “left” breakpoint of CNV - Identical to LQ in .vcf output from genotyping |
Q_STOP | Phred-scaled quality of ‘right” breakpoint of CNV - Identical to RQ in .vcf output from genotyping |
MEAN_RD | Mean normalized read depth (z-score) over interval - Identical to RD in .vcf output from genotyping |
MEAN_ORIG_RD | Mean read depth (# of reads) over interval - Identical to ORD in .vcf output from genotyping |