Table 4. Analyses of nucleotide polymorphism and detection of positive selection in sequences within phylogenetic groups BneSRKL_A and BneSRKL_B.
Log Likelihood | Positively Selected Sites | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
nseq | nsites | πS | πN | πN/πS | M7 | M8 | -2ΔLn | p-Value | Sitesa | Average dN/dS | |
BneSRKL_A | 7 | 528 | 0.0993 | 0.0777 | 0.78 | −1432 | −1429 | 6.37 | 0.041 | 262N 295Sb | 4.110 |
BneSRKL_B | 10 | 465 | 0.1705 | 0.0984 | 0.58 | −1714 | −1708 | 11.71 | 0.003 | 274Db,c | 2.915 |
276b,d | |||||||||||
303Vb,c |
Abbreviations: nseq, number of sequences analyzed; nsites, number of nucleotide sites; πS and πS, nucleotide diversity at synonymous and non-synonymomus sites, respectively.
BoSRK60 used as reference.
Sites in hypervariable regions.
Sites also detected in Arabidopsis and Brassica.
Site also detected in Arabidopsis.