Table 3.
Benign DGV
| Chr | Start | End | P1 | P2 | P3 | P4 | P5 | P6 | P7 | P8 | P9 | Genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr1 | 72768884 | 72795450 | -2 | 2 | 0 | 0 | -1 | -2 | 2 | 0 | -1 | NEGR1 |
| chr1 | 104115084 | 104211026 | 0 | 0 | 0 | -2 | -1 | 1 | 0 | 1 | -1 | AMY2B, AMY2A, AMY1A |
| chr1 | 149041962 | 149378236 | 0 | -1 | 2 | 0 | 1 | 1 | 0 | 0 | 1 | NBPF16 |
| chr1 | 248727958 | 248785532 | 0 | 0 | -2 | 0 | 1 | 1 | 0 | 1 | 1 | OR2T34, OR2T10 |
| chr1 | 248808422 | 249212638 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | OR2T27, OR14I1, SH3BP5L, ZNF672, ZNF692, PGBD2 |
| chr2 | 89163891 | 89312560 | 1 | 0 | 1 | 0 | 0 | 1 | 2 | 0 | 2 | RPIA |
| chr4 | 69414770 | 69462408 | 0 | -1 | 2 | 0 | -2 | 1 | 0 | 0 | -2 | UGT2B17 |
| chr8 | 39249381 | 39374759 | 0 | -1 | 0 | -2 | -1 | -2 | 2 | 0 | 0 | ADAM32 |
| chr11 | 55377939 | 55450758 | 2 | 2 | -2 | 0 | 0 | 1 | 0 | 2 | -1 | OR4P4, OR4S2, OR4C6 |
| chr12 | 9637352 | 9672628 | -2 | 0 | 2 | 0 | 0 | 1 | 0 | -2 | -1 | PZP |
| chr14 | 106334936 | 106370856 | 2 | 0 | 2 | 0 | 0 | 0 | 2 | 2 | 2 | TMEM121 |
| chr15 | 20886611 | 21964061 | 0 | -2 | 0 | 0 | 0 | 1 | -1 | -2 | -2 | NBEAP1, POTEB, NF1P2, CT60 |
| chr16 | 32573837 | 33651735 | 0 | -1 | 1 | 0 | 0 | -1 | -1 | 0 | -1 | TP53TG3, TP53TG3B |
Benign DGV: the first column indicates the chromosomes containing recurrent benign DGV, the second and third columns the proximal and distal breakpoints of rearrangements, the fourth to twelfth columns indicate patients P1-P9 with the respective calls: -2 (homozygous deletion); -1 (heterozygous deletion); 1 (duplication); 2 (amplification). The thirteenth column shows the genes included in the benign DGV.