Table 1. Cell culture growth and expanded CAG·CTG repeat dynamics.
Treatment [drug concentration] | Time [days] | PDs | PDT [h] | BrdU incorporation [%] (P)a | Median repeat gain relative to progenitor [repeats] (P)b | Median rate of expansion [repeats per day] (P)c |
---|---|---|---|---|---|---|
Control 1d | 121 | 120 | 24.2 | 94 | 65 (<0.0001) | 0.54 |
Mitomycin C [30 μM]e | 54 | <1 | >3000 | 6 (<0.0001) | 68 (<0.0001) | 1.26 (0.005) |
Apicidin [320 nM in 0.1% DMSO] | 85 | <1 | >3000 | 2 (<0.0001) | 39 (<0.003) | 0.46 (0.066) |
Trichostatin A [160 nM in 0.1% DMSO] | 120 | <1 | >3000 | 0 (<0.0001) | 68 (<0.0001) | 0.56 (0.81) |
Hydroxyurea [50 μM] | 121 | ∼1 | ∼3000 | 91 (<0.21) | 55 (<0.0001) | 0.45 (0.02) |
Control 2d | 89 | 100 | 21.4 | 94 | 42 (<0.018) | 0.48 |
DMSO [0.1%] | 89 | 95 | 22.5 | N/D | 37 (<0.0004) | 0.41 (0.47) |
Roscovitine [20 μM in 0.1% DMSO] | 89 | <1 | >3000 | 26 (<0.0001) | 27 (<0.016) | 0.33 (0.30) |
pSwitch control | 89 | 69 | 31.0 | N/D | 45 (<0.0007) | 0.50 |
pSwitch mifepristone A [10 nM] | 89 | 68 | 31.4 | 97 | 92 (<0.0001) | 1.04 (0.005) |
p16 control | 89 | 74 | 28.9 | N/D | 46 (<0.032) | 0.52 (0.94) |
p16 mifepristone A [10 nM] | 89 | ∼2 | ∼1000 | 45 (<0.0001) | 83 (<0.0001) | 0.93 (0.008)(0.39)f |
p21 control | 89 | 69 | 31.0 | N/D | 45 (<0.0007) | 0.51 (0.69) |
p21 mifepristone A [10 nM] | 89 | <2 | >1000 | 52 (<0.0001) | 69 (<0.0055) | 0.77 (0.38) |
aEach treatment sample was compared to the relevant control sample using a one-tailed Fisher's exact test.
bRepeat length distributions in each replicate were compared to the progenitor culture using a one-tailed Mann–Whitney U test. The maximum P-value obtained across all the replicates for each treatment is shown.
cMedian repeat lengths for each treatment were compared to the relevant control culture using a two-tailed Mann–Whitney U test as previously described (31).
dChemical cell cycle arrest of cells was performed in two independent experiments, one for MMC, apicidin, TSA and HU treatment, and one for roscovitine treatment.
eSingle acute exposure.
fCompared relative to the pSwitch mifepristone A control.