Table 1. Genome coverage (in Mb) by EDD and current broad peak callers.
Data set | Cell type | EDD | BroadPeak | PeakRanger | RSEG | Sicer |
---|---|---|---|---|---|---|
Lamin B1a | IMR90 fibroblast_rep1 | 1,041.675 | 721.914 | 9.511 | 1,462.367 | 248.291 |
Lamin B1a | IMR90 fibroblast_rep2 | 1,078.179 | 717.013 | 25.318 | 1,502.753 | 285.394 |
Lamin B1a | IMR90 fibroblast_rep3 | 1,047.753 | 721.914 | 9.511 | 1,462.367 | 248.291 |
Lamin A | AD04DF fibroblast_rep1 | 728.178 | 183.268 | 4.123 | 1,797.390 | 10.846 |
Lamin A | AD04DF fibroblast_rep2 | 721.501 | 185.392 | 4.048 | 1,854.759 | 10.106 |
Lamin A | LDF fibroblast | 694.661 | 63.357 | 6.473 | 1,495.391 | 14.183 |
aRaw data from ref. (6).