Table 2. Number of peaks detected by EDD and current broad peak callers.
Data set | Cell type | EDD | BroadPeak | PeakRanger | RSEG | Sicer |
---|---|---|---|---|---|---|
Lamin B1a | IMR90 fibroblast_rep1 | 1803 | 16557 | 11827 | 6413 | 35321 |
Lamin B1a | IMR90 fibroblast_rep2 | 1890 | 22797 | 23422 | 6533 | 43798 |
Lamin B1a | IMR90 fibroblast_rep3 | 1815 | 30017 | 6285 | 7116 | 46492 |
Lamin A | AD04DF fibroblast_rep1 | 372 | 12639 | 1924 | 2697 | 937 |
Lamin A | AD04DF fibroblast_rep2 | 357 | 12639 | 1884 | 2151 | 849 |
Lamin A | LDF fibroblast | 539 | 793 | 2540 | 2450 | 1546 |
aRaw data from ref. (6).