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. 2014 Apr 29;42(11):6935–6944. doi: 10.1093/nar/gku327

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 1. — Characteristic distance features of ChIA-PET data. (A) Log₁₀-distance distribution between the two ends of chimeric and non-chimeric PETs, where non-chimeric PETs presented a trimodal distribution. The third peak at right of non-chimeric PETs was close to that of chimeric PETs. (B) Log₁₀-distance distribution between the two ends of PETs 2+ clusters of MCF7 ERα ChIA-PET data for two replicates. Interactions with span more than 1 Mbps were excluded. Peak positions located at 3.8 and 4.77. (C) Log₁₀-distance distribution between the two ends of PETs 2+ clusters from MCF7-specific and K562-specific Pol2 ChIA-PET data. Peak positions located at 3.7 and 4.64. (D) Log₁₀-distance distribution of EE, PP and EP interactions from MCF7 Pol2 ChIA-PET data. Positions of peaks for EE and PP interactions were 3.7 and 4.8, respectively.