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. 2014 May 14;42(11):6850–6860. doi: 10.1093/nar/gku378

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Enrichment of dispersed families on mobile elements (plasmids). The abundances of domain superfamilies on plasmids were obtained from domain assignments of the NCBI plasmid sequence collection. The plot shows the correlation of Q_f with enrichment of families on plasmids. The y-axis represents a log ratio score (21) between the percentage of total plasmid domains belonging to a given superfamily and the background percentage computed on all bacterial genomes. This score increases for families that are increasingly enriched on plasmids.