Table 1.
Selected small RNA deep sequencing in diverse eukaryotic lineages.
| Organism | Clade | Type of dataset | References |
|---|---|---|---|
| Human | animal vertebrate | IP-seq/small RNA-seq | [84, 265–267] |
| mouse | animal vertebrate | IP-seq/small RNA-seq | [47, 268, 269] |
| Drosophila | animal insect | IP-seq/small RNA-seq | [270–272] |
| C. elegans | animal nematode | IP-seq/small RNA-seq | [119, 273] |
| Saccharomyces castellii | budding yeast | small RNA-seq | [167] |
| Saccharomyces cerevisiae | budding yeast | small RNA-seq | [167] |
| Schizosaccharomyces pombe | fission yeast | IP-seq | [51] |
| Magnaporthe oryzae | filamentous fungus | small RNA-seq | [85] |
| Arabidopsis thaliana | plant | IP-seq/small RNA-seq | [50, 274–276] |
| Chlamydomonas reinhardtii | algal plant | small RNA-seq | [277] |
| Entamoeba histolytica | amoebozoan | IP-seq | [60] |
| Dictyostelium discoideum | amoebozoan mycetozoa (slime mold) | small RNA-seq | [40] |
| Toxoplasma gondii | apicomplexa | small RNA-seq | [39] |
| Tetrahymena thermophila | chromalveolate ciliate | IP-seq/small RNA-seq | [59] |
| Trypanosoma brucei | kinetoplastid | IP-seq | [52] |
| Trypanosoma cruzi | kinetoplastid | small RNA-seq | [173] |
| Trichomonas vaginalis | parabasalid | small RNA-seq | [37, 164] |
| Giardia lamblia | diplomonad | small RNA-seq | [37, 164] |