Table 9.
Genes up-regulated during both 1O2 acclimation and dark to light transition
| Gene ID (v4) | Gene name | Annotation | RB (log2) | DL (log2) (Duanmu et al., 2013) |
|---|---|---|---|---|
| Cre02.g137700.t1.1* | 6.49 | 2.34 | ||
| Cre06.g281250.t1.1* | CFA1 | cyclopropane fatty acid synthase | 5.92 | 4.49 |
| Cre01.g033300.t1.1* | 5.72 | 3.62 | ||
| Cre13.g566850.t1.1* | SOUL2 | SOUL heme-binding protein | 5.53 | 2.25 |
| Cre13.g600650.t1.1* | 4.76 | 3.26 | ||
| Cre06.g263550.t1.1* | LCI7 | R53.5-related protein | 4.46 | 5.27 |
| Cre07.g342100.t1.1* | 4.43 | 1.84 | ||
| Cre09.g398700.t1.1* | CPLD27 | coclaurine N-methyltransferase | 4.05 | 1.36 |
| Cre12.g492650.t1.1* | FAS2 | fasciclin-like protein | 4.01 | 9.24 |
| Cre08.g381510.t1.1* | 3.94 | 3.27 | ||
| Cre10.g458450.t1.2* | GPX5 | glutathione peroxidase | 3.91 | 3.08 |
| Cre11.g474600.t1.1* | 3.90 | 1.99 | ||
| Cre13.g600700.t1.1* | 3.78 | 5.79 | ||
| Cre14.g613950.t1.1* | 3.65 | 2.68 | ||
| Cre06.g269300.t1.1* | 3.50 | 1.99 | ||
| Cre08.g380300.t1.2* | MSRA3 | peptide methionine sulfoxide reductase | 3.45 | 1.79 |
| Cre01.g031650.t1.2* | CGLD12 | protein with potential galactosyl transferase activity | 3.30 | 4.90 |
| Cre14.g629061.t1.1* | 3.25 | 1.88 | ||
| Cre13.g564900.t1.1* | 3.22 | 3.38 | ||
| Cre13.g586450.t1.1 | 3.21 | 3.50 | ||
| Cre02.g139500.t1.1* | 3.04 | 2.12 | ||
| Cre19.g756100.t1.1 | 3.04 | 6.53 | ||
| Cre01.g036000.t1.2 | 3.02 | 1.16 | ||
| Cre14.g618400.t1.1* | 2.97 | 2.16 | ||
| Cre17.g741300.t1.2* | 2.88 | 1.92 | ||
| Cre16.g648700.t1.2* | 2.79 | 2.35 | ||
| Cre17.g729950.t1.1 | 2.77 | 2.61 | ||
| Cre17.g721000.t1.1 | 2.70 | 2.12 | ||
| Cre06.g263500.t1.1* | 2.67 | 3.37 | ||
| Cre01.g016150.t1.1* | 2.65 | 2.92 | ||
| Cre08.g380000.t1.1* | 2.59 | 3.74 | ||
| Cre04.g224800.t1.1 | VAMP74 | R-SNARE protein, VAMP72-family | 2.58 | 3.34 |
| Cre03.g210150.t1.1 | 2.57 | 3.44 | ||
| Cre14.g615600.t1.1* | 2.53 | 2.40 | ||
| Cre06.g293100.t1.1 | Qc-SNARE SYP6-like protein | 2.48 | 4.90 | |
| Cre08.g368950.t1.1 | DHQS | 3-dehydroquinate synthase | 2.39 | 2.49 |
| Cre10.g424350.t1.2 | metalloprotease | 2.37 | 3.18 | |
| Cre12.g537225.t1.1 | 2.34 | 3.39 | ||
| Cre07.g336900.t1.2 | 2.32 | 2.31 | ||
| Cre16.g664050.t1.1 | 2.31 | 1.88 | ||
| Cre16.g677750.t1.1 | 2.04 | 2.22 | ||
| Cre12.g537227.t1.1 | 2.00 | 3.46 | ||
| Cre17.g737050.t1.1 | RabGAP/TBC protein | 1.99 | 2.32 | |
| Cre06.g297450.t1.1 | 1.93 | 1.46 | ||
| Cre06.g258600.t1.1* | 1.91 | 3.63 | ||
| Cre16.g663950.t1.1 | SC5D, C-5 sterol desaturase | 1.89 | 2.03 | |
| Cre13.g588150.t1.1 | 1.86 | 6.21 | ||
| Cre17.g722150.t1.1 | PKS3 | type III polyketide synthase | 1.85 | 1.61 |
| Cre16.g688550.t1.1 | GSTS1 | glutathione-S-transferase | 1.84 | 1.20 |
| Cre03.g207800.t1.1 | 1.84 | 7.09 | ||
| Cre10.g444550.t1.1* | SPP1A | signal peptide peptidase | 1.81 | 5.33 |
| Cre13.g602500.t1.2 | 1.76 | 1.59 | ||
| Cre03.g163400.t1.2* | 1.76 | 2.15 | ||
| Cre10.g450000.t1.1 | 1.74 | 2.18 | ||
| Cre01.g015500.t1.1 | 1.72 | 1.55 | ||
| Cre02.g105750.t1.2 | 1.71 | 3.23 | ||
| Cre01.g061750.t1.1 | SPT2 | serine palmitoyltransferase | 1.71 | 2.29 |
| Cre83.g796250.t1.1 | 1.68 | 1.59 | ||
| Cre16.g656150.t1.1 | 1.67 | 3.55 | ||
| Cre01.g002050.t1.2 | 1.66 | 3.15 | ||
| Cre12.g556750.t1.2 | Tic32-like 1 | Short-chain dehydrogenase, classical family, similar to PsTic32 | 1.66 | 3.15 |
| Cre12.g559100.t1.1 | 1.66 | 3.11 | ||
| Cre09.g411750.t1.2 | 1.61 | 1.96 | ||
| Cre11.g482650.t1.2 | 1.57 | 3.40 | ||
| Cre06.g310500.t1.1* | 1.57 | 6.23 | ||
| Cre09.g397900.t1.1 | transmembrane protein | 1.56 | 2.02 | |
| Cre04.g215600.t1.1 | 1.53 | 2.64 | ||
| Cre02.g093800.t1.1 | 1.51 | 4.99 | ||
| Cre02.g093750.t1.1 | NRX2 | Nucleoredoxin 2 | 1.50 | 6.26 |
| Cre01.g004350.t1.1 | 1.50 | 2.29 | ||
| Cre01.g034600.t1.1 | 1.50 | 2.22 | ||
| Cre11.g472600.t1.2 | 1.48 | 2.00 | ||
| Cre12.g500500.t1.2 | SMT1 | sterol-C24-methyltransferase | 1.46 | 3.05 |
| Cre13.g577950.t1.1 | VPS6 | subunit of the ESCRT-III complex | 1.45 | 2.36 |
| Cre02.g118200.t1.1 | 1.44 | 2.79 | ||
| Cre01.g012500.t1.1 | PRA1 | prenylated rab acceptor family protein | 1.43 | 2.46 |
| Cre12.g521600.t1.2 | 1.42 | 2.89 | ||
| Cre03.g179100.t1.1 | ubiquitin fusion degradation protein | 1.41 | 3.38 | |
| Cre09.g413150.t1.2 | 1.39 | 4.31 | ||
| Cre13.g572200.t1.1 | tyrosine/tryptophan transporter protein | 1.39 | 2.57 | |
| Cre03.g185850.t1.2 | PfkB-type carbohydrate kinase | 1.37 | 3.05 | |
| Cre18.g743600.t1.1 | 1.37 | 1.65 | ||
| Cre02.g076800.t1.1 | sterol reductase | 1.36 | 2.41 | |
| Cre06.g256750.t1.1 | FAT1 | acyl carrier protein thioesterase | 1.35 | 1.67 |
| Cre17.g729450.t1.1 | 1.34 | 1.90 | ||
| Cre11.g471550.t1.1 | 1.34 | 3.29 | ||
| Cre09.g395750.t1.2 | 1.33 | 2.87 | ||
| Cre14.g617100.t1.1 | 1.33 | 3.33 | ||
| Cre16.g691500.t1.1 | Sec14p-like lipid-binding protein | 1.33 | 2.28 | |
| Cre02.g079550.t1.1 | DRP2 | Dynamin-related GTPase | 1.32 | 2.34 |
| Cre02.g079300.t1.1 | VPS4 | AAA-ATPase of VPS4/SKD1 family | 1.32 | 1.96 |
| Cre05.g231700.t1.2 | 1.31 | 2.40 | ||
| Cre02.g132300.t1.2 | DNJ12 | DnaJ-like protein | 1.30 | 2.24 |
| Cre69.g794101.t1.1 | 1.30 | 2.65 | ||
| Cre13.g565600.t1.2 | 1.29 | 3.42 | ||
| Cre13.g593700.t1.1 | monooxygenase, DBH-like | 1.29 | 1.81 | |
| Cre12.g498000.t1.2 | 1.28 | 3.88 | ||
| Cre06.g292900.t1.2 | 1.28 | 2.16 | ||
| Cre08.g372100.t1.1 | HSP70A | Heat shock protein 7A | 1.27 | 2.28 |
| Cre01.g039350.t1.1 | NCR2 | NADPH-cytochrome P45 reductase | 1.26 | 2.19 |
| Cre03.g211100.t1.1 | 1.26 | 2.11 | ||
| Cre17.g731800.t1.1 | 1.25 | 1.78 | ||
| Cre17.g730650.t1.1 | 1.25 | 2.28 | ||
| Cre02.g123000.t1.2 | 1.24 | 1.42 | ||
| Cre05.g247700.t1.2 | 1.24 | 2.71 | ||
| Cre08.g360800.t1.2 | haloacid dehalogenase-like hydrolase | 1.23 | 4.39 | |
| Cre07.g350750.t1.1 | PTOX1 | alternative oxidase | 1.22 | 3.32 |
| Cre17.g703750.t1.1 | 1.20 | 2.21 | ||
| Cre06.g306041.t1.1 | 1.20 | 2.90 | ||
| Cre02.g116650.t1.1 | 1.20 | 2.83 | ||
| Cre08.g379400.t1.2 | 1.18 | 3.04 | ||
| Cre16.g677000.t1.1 | HSP70E | Heat shock protein 7E | 1.18 | 2.50 |
| Cre06.g283900.t1.1 | 1.18 | 5.24 | ||
| Cre14.g626750.t1.1 | 1.17 | 4.12 | ||
| Cre01.g010700.t1.1 | 1.16 | 2.10 | ||
| Cre01.g002000.t1.2 | predicted proteim | 1.15 | 1.68 | |
| Cre04.g213150.t1.1 | 1.15 | 2.78 | ||
| Cre16.g694250.t1.1 | 1.15 | 2.92 | ||
| Cre05.g246400.t1.1 | 1.15 | 2.74 | ||
| Cre02.g128450.t1.1 | 1.13 | 2.82 | ||
| Cre03.g180250.t1.1 | Myo-inositol-1-phosphate synthase | 1.13 | 2.05 | |
| Cre03.g186150.t1.1 | 1.13 | 1.78 | ||
| Cre02.g137800.t1.1 | 1.13 | 2.00 | ||
| Cre11.g471500.t1.1 | MFT10 | predicted protein | 1.11 | 1.40 |
| Cre10.g435200.t1.1 | 1.10 | 2.13 | ||
| Cre13.g593850.t1.2 | 1.10 | 3.91 | ||
| Cre19.g754000.t1.2 | 1.10 | 2.33 | ||
| Cre13.g593869.t1.1 | 1.10 | 3.90 | ||
| Cre08.g377300.t1.2 | 1.09 | 3.27 | ||
| Cre04.g225050.t1.2 | predicted protein | 1.09 | 3.55 | |
| Cre07.g330300.t1.1 | 1.08 | 2.22 | ||
| Cre12.g500450.t1.2 | 1.08 | 3.00 | ||
| Cre06.g262000.t1.1 | 1.08 | 1.87 | ||
| Cre10.g441550.t1.2 | MAM3B | predicted protein | 1.07 | 1.54 |
| Cre06.g249800.t1.1 | unknown conserved protein | 1.07 | 2.08 | |
| Cre01.g038250.t1.1 | SDC1 | serine decarboxylase | 1.06 | 1.92 |
| Cre44.g788200.t1.1 | 1.06 | 2.13 | ||
| Cre08.g359200.t1.2 | 1.03 | 2.69 | ||
| Cre05.g245950.t1.1 | DRP1 | Dynamin-related GTPase | 1.03 | 2.15 |
| Cre05.g234100.t1.1 | CYP745A1 | cytochrome P45 | 1.01 | 2.61 |
| Cre07.g328700.t1.2 | 1.01 | 1.56 | ||
| Cre10.g440250.t1.2 | 1.01 | 2.14 | ||
| Cre17.g725200.t1.1 | MDR-like ABC transporter | 1.01 | 3.30 | |
| Cre82.g796100.t1.1 | 1.01 | 2.49 |
*
Genes defined as SAK1-dependent in Table 4.