TABLE 2.
TyrRS variant | Disrupted contact | Tyr |
Phea (kcat/Km) | Specificityb, Tyr/Phe | ||
---|---|---|---|---|---|---|
Km | kcat | kcat/Km | ||||
μm | s−1 | s−1/μm | s−1/μm | kcat/Km | ||
WT | 15 ± 4 | 13 ± 2 | 0.85 | 1.4 × 10−4 ± 3.5 × 10−5 | 6100 | |
W40C | 510 ± 200 | 0.4 ± 0.14 | 7.9 × 10−4 | 7.3 × 10−8 ± 9 × 10−9 | 10,850 | |
Y52H | 36 ± 4 | 0.7 ± 0.04 | 0.018 | 5 × 10−7 ± 1 × 10−7 | 36,000 | |
A74G | Hydrophobic | 103 ± 45 | 12 ± 6 | 0.11 | 2.7 × 10−5 ± 1 × 10−5 | 4100 |
H77T | Hydrophobic | 640 ± 51 | 0.3 ± 0.02 | 4.7 × 10−4 | 7.3 × 10−8 ± 1.4 × 10−9 | 6500 |
N82D | Hydrogen bonding with substrate | 42 ± 16 | 5 ± 2 | 0.12 | 1.9 × 10−5 ± 1.5 × 10−6 | 6300 |
G120N | 2° hydrogen bonding | 1070 ± 50 | 1.2 ± 0.2 | 1.2 × 10−3 | 5 × 10−7 ± 4 × 10−8 | 2400 |
Y123W | 2° hydrogen bonding | 42 ± 2 | 7.3 ± 0.85 | 0.18 | 2.3 × 10−5 ± 6.2 × 10−6 | 7800 |
D122N | 2° hydrogen bonding | 15 ± 2 | 9 ± 0.7 | 0.6 | 3 × 10−5 ± 1 × 10−5 | 20,000 |
L125W | 2° hydrogen bonding | 12 ± 0.4 | 8.3 ± 1.2 | 0.72 | 1.3 × 10−4 ± 1.4 × 10−5 | 6000 |
a kcat/Km was estimated using subsaturating Phe concentrations from the slope of the equation, V = kcat [E][S]/Km.
b Measured in kcat/Km.