Amt of sequence data obtained (Mb) with the following library type/name: |
|
2 × 100, 500-bp inserts |
|
Initially |
1,668 |
After quality filtering |
1,350 |
2 × 100, 2-kb inserts |
|
Initially |
615 |
After quality filtering |
502 |
2 × 100, 5-kb inserts |
|
Initially |
651 |
After quality filtering |
502 |
Assembly |
|
Total no. of scaffolds in main genome |
85 |
Total no. of contigs in main genome |
576 |
Main genome scaffold sequence total (Mb) |
13.0 |
Main genome contig sequence total (Mb) |
12.8 |
Max scaffold size (Mb) |
1.4 |
Minimum scaffold size (kb) |
1 |
Main genome scaffold N50 size (Mb) |
0.7 |
% main genome in scaffolds of >50 kb |
97.6 |
Predicted gene models |
|
Avg gene length (bp) |
1,569 |
Avg protein length (amino acids) |
510 |
Avg exon frequency per gene |
1.15 |
Avg exon length (bp) |
1,335 |
Avg intron length (bp) |
248 |
Predicted gene models and supporting lines of evidence |
|
No. of gene models |
5,255 |
% complete (with start and stop codons) |
99.9 |
% genes with homology support |
95.0 |
Functional annotation of proteins (no. of proteins assigned a GO term) |
4,348 |