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. 2014 Jul;80(14):4398–4413. doi: 10.1128/AEM.00601-14

TABLE 2.

Genome analysis summary for Brettanomyces bruxellensis strain ST05.12/22

Parameter Value
Amt of sequence data obtained (Mb) with the following library type/name:
    2 × 100, 500-bp inserts
        Initially 1,668
        After quality filtering 1,350
    2 × 100, 2-kb inserts
        Initially 615
        After quality filtering 502
    2 × 100, 5-kb inserts
        Initially 651
        After quality filtering 502
Assembly
    Total no. of scaffolds in main genome 85
    Total no. of contigs in main genome 576
    Main genome scaffold sequence total (Mb) 13.0
    Main genome contig sequence total (Mb) 12.8
    Max scaffold size (Mb) 1.4
    Minimum scaffold size (kb) 1
    Main genome scaffold N50 size (Mb) 0.7
    % main genome in scaffolds of >50 kb 97.6
Predicted gene models
    Avg gene length (bp) 1,569
    Avg protein length (amino acids) 510
    Avg exon frequency per gene 1.15
    Avg exon length (bp) 1,335
    Avg intron length (bp) 248
Predicted gene models and supporting lines of evidence
    No. of gene models 5,255
    % complete (with start and stop codons) 99.9
    % genes with homology support 95.0
Functional annotation of proteins (no. of proteins assigned a GO term) 4,348