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. 2014 Jul;80(14):4286–4293. doi: 10.1128/AEM.00597-14

TABLE 1.

Oligonucleotide primers used in this study

Primer designation Configuration Sequence (5′→3′)a
A* BamHI actagtggatcccccggg
B* SnabI caaaaggtgatacgtacactt
M1 −13/−11 ATA→TAC ccctttttctaTACtgcaccta
M2 −13/−10 ATAT→GGGG ctttttctaGGGGgcaccta
M3 −16 C→A tccctttttAtaatatgcacct
M4 −16 C→G ttccctttttGtaatatgcacc
M5 −16 C→T tttccctttttTtaatatgcacc
M6 −16/−14 CTA→GAC tttccctttttGACatatgcacc
M7 −40/−37 TTGA→CCCC ttactatttCCCCagctgtgt
M8 −36/−35 AG→CA ttactatttttgaCActgtgt
M9 Deletion of −25 and −24 bases gaagctgtgtatt..cctttttc
M10 Insertion between −25 and −24 bases gaagctgtgtatttTCccctttttc
M11 −52, −51, −49, −48 T→G gtaggttcaaGGaGGactatt
a

Sequences complementary to the target DNA are lowercased; sequences unique to the oligonucleotide primers are shown in capital and bold letters; deleted nucleotides are indicated by dots; restriction sites used for cloning are in bold letters and underlined. The sequence of A* and B* primers contains the restriction sites used in the cloning.