TABLE 1.
Primer designation | Configuration | Sequence (5′→3′)a |
---|---|---|
A* | BamHI | actagtggatcccccggg |
B* | SnabI | caaaaggtgatacgtacactt |
M1 | −13/−11 ATA→TAC | ccctttttctaTACtgcaccta |
M2 | −13/−10 ATAT→GGGG | ctttttctaGGGGgcaccta |
M3 | −16 C→A | tccctttttAtaatatgcacct |
M4 | −16 C→G | ttccctttttGtaatatgcacc |
M5 | −16 C→T | tttccctttttTtaatatgcacc |
M6 | −16/−14 CTA→GAC | tttccctttttGACatatgcacc |
M7 | −40/−37 TTGA→CCCC | ttactatttCCCCagctgtgt |
M8 | −36/−35 AG→CA | ttactatttttgaCActgtgt |
M9 | Deletion of −25 and −24 bases | gaagctgtgtatt..cctttttc |
M10 | Insertion between −25 and −24 bases | gaagctgtgtatttTCccctttttc |
M11 | −52, −51, −49, −48 T→G | gtaggttcaaGGaGGactatt |
Sequences complementary to the target DNA are lowercased; sequences unique to the oligonucleotide primers are shown in capital and bold letters; deleted nucleotides are indicated by dots; restriction sites used for cloning are in bold letters and underlined. The sequence of A* and B* primers contains the restriction sites used in the cloning.