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. 2014 Jun 24;9(6):e100245. doi: 10.1371/journal.pone.0100245

Table 4. Minimal deleted or gained regions found in APL series, their frequency and the genes included in each region.

Minimal deleted region (MDR) Proximal Distal Size (Mb) Akagi et al. (n = 47) TCGA (n = 20) Nowak et al. (n = 93) This Report (n = 48) Total n = 208 Genes
del(6p25.1–24.3) 5600438 7409514 1,81 1 (2%) 0 0 2 (4%) 3 (1%) FARS2, NRN1, F13A1, LY86, RREB1, CAGE1.
del(6p24.1) 12278913 13386241 1,11 0 0 1 (1%) 1 (1%) 2 (1%) EDN1, PHACTR1, TBC1D7, GF0D1.
del(7q33-qter) 137199691 158861884 21,66 1 (2%) 1 (5%) 5 (5%) 3 (6%) 10 (5%) several genes including LUC7L2, EZH2.
del/UPD(11p14) 22936456 30671304 7,73 3 (6%) 1 (5%) 0 1 (1%) 5 (2%) LUZP2, ANO3, MUC15, SLC5A12, BBPX1, CCDC34, LGR4, LIN7C, BDNF, METTL15, KCNA4, FSHB, MPPED2.
del(12p13.33) 1027361 1134264 0,11 0 0 0 2 (4%) 2 (1%) RAD52, ERC1.
del(15q24.1) 74691249 75117832 0,43 0 0 1 (1%) 1 (1%) 2 (1%) SEMA7A, UBL7, ARID3B, CLK3, EDC3, CYP1A1, CSK, LMAN1L.
del(17pter-p11.2) 0 18935523 18,94 1 (2%) 0 3 (3%) 1 (1%) 5 (2%) several genes including TP53.
del(17q12) 37959105 38079219 0,12 0 0 1 (1%) 1 (1%) 2 (1%) IKZF3, GSDMB, ZPBP2, ORMDL3.
Minimal gained region (MGR)
dup(4q27–q31.23) 123059206 150420462 27,36 0 0 5 (5%) 1 (1%) 6 (3%) several genes.
dup(8q24) 122538604 132023578 9,48 8 (17%) 2 (10%) 23 (25%) 11 (23%) 44 (21%) several genes including MYC.
dup(13q31.1–q34) 85060629 115108397 30,05 1 (2%) 0 1 (1%) 2 (4%) 4 (2%) several genes.
dup(15q24.1) intra PML 74262253 74304138 0,04 0 0 4 (4%) 2 (4%) 6 (3%) PML.
dup(15q24.1–q26.3) 74326556 102364660 28,04 2 (4%) 0 3 (3%) 1 (1%) 6 (3%) several genes including PML.
dup(17q21.2) intra RARA 38505591 38673928 0,17 0 0 1 (1%) 1 (1%) 2 (1%) RARA.
dup(17p11.2–q21.2) 21550542 38477259 16,93 1 (2%) 0 3 (3%) 1 (1%) 5 (2%) several genes including NF1, RARA
dup(21q22) 39661746 39772776 0,11 2 (4%) 0 1 (1%) 1 (1%) 5 (2%) KCNJ15, ERC.