Table 3. Alignment statistics of the RNA-Seq analysis.
Summary | S-SuS | R-mid |
Total reads | 6,710,697 (100.00%) | 6,224,800 (100.00%) |
Total base pairs | 328,824,153 (100.00%) | 305,015,200 (100.00%) |
Total mapped reads | 5,520,945 (82.27%) | 4,905,375 (78.80%) |
Perfect match | 3,975,169 (59.24%) | 3,148,053 (50.57%) |
< = 2 bp mismatch | 1,545,776 (23.03%) | 1,757,322 (28.23%) |
Unique match | 4,660,267 (69.45%) | 4,233,287 (68.01%) |
Multi-position match | 860,678 (12.83%) | 672,088 (10.80%) |
Total unmapped reads | 1,189,752 (17.73%) | 1,319,425 (21.20%) |