Table 3.
- KEGG pathways enriched for genes in each of the four main classes
| Pathway | q value¶ | #Genes |
|---|---|---|
| Category I: Genes Down-regulated | ||
| Pyruvate metabolism | 0.001044 | 7 |
| Pentose phosphate pathway | 0.001687 | 5 |
| Fructose and mannose metabolism | 0.007189 | 5 |
| Glycolysis / Gluconeogenesis | 0.041722 | 5 |
| Fatty acid metabolism | 0.043732 | 4 |
| Galactose metabolism | 0.047511 | 4 |
| Category I: Genes Up-regulated | ||
| Folate biosynthesis | 2.03E-04 | 4 |
| Category II: Genes Down-regulated | ||
| Galactose metabolism | 0.001854 | 4 |
| Starch and sucrose metabolism | 0.002988 | 5 |
| Fatty acid elongation in mitochondria | 0.03675 | 2 |
| Category II: Genes Up-regulated | ||
| Oxidative phosphorylation | 3.48E-05 | 11 |
| Category III: Genes Down-regulated | ||
| No enrichment found | ||
| Category III: Genes Up-regulated | ||
| No enrichment found | ||
| Category IV: Genes Down-regulated | ||
| Organic cation transport | 0.018776 | 2 |
| Organic cation/anion/zwitterion transport | 0.018776 | 2 |
| Category IV: Genes Up-regulated | ||
| No enrichment found | ||
¶
The Benjamini and Hochberg method was used for Multiple Hypothesis Test correction allowing a maximum value cutoff of 0.05