Fig. 6.

Read mapping patterns indicative of a modified duplication surrounding jingwei in Drosophila yakuba line NY66-2. Duplications are indicated with divergently oriented paired-end reads (blue) as well as with split read mapping of long molecule sequencing (purple). Deletions in one copy are suggested by gapped read mapping of long molecule reads (red) as well as multiple long-spanning read pairs at the tail of mapping distances in paired-end read sequencing (green) just upstream from jgw. Up to 20% of duplicates observed have long-spanning read pairs indicative of putative deletions in one or more alleles in the population.