Table 5.

GO Categories Enriched for Positively Selected Genes, Based on Scores from the Branch-Site Test from Codeml in Bees.

SetID	Ontology	SetName	SetSize	Score	P-value	FDR
GO:0005099	MF	Ras GTPase activator activity	11	6.0	1.1e-5	0.03
GO:0005083	MF	Small GTPase regulator activity	18	8.1	0.00010	0.041
GO:0004872	MF	Receptor activity	16	7.2	0.00020	0.041
GO:0022836	MF	Gated channel activity	11	5.4	0.00021	0.041
GO:0006399	BP	tRNA metabolic process	26	10.3	0.00040	0.053
GO:0071842	BP	Cellular component organization at cellular level	190	55.5	0.0013	0.065
GO:0006418	BP	tRNA aminoacylation for protein translation	19	7.6	0.0021	0.084
GO:0009725	BP	Response to hormone stimulus	11	4.9	0.0022	0.084
GO:0005635	CC	Nuclear envelope	13	5.6	0.0022	0.084
GO:0032507	BP	Maintenance of protein location in cell	12	5.3	0.0023	0.084
GO:0051336	BP	Regulation of hydrolase activity	20	7.9	0.0026	0.089
GO:0006629	BP	Lipid metabolic process	51	17.0	0.0031	0.095
GO:0031072	MF	Heat shock protein binding	17	6.7	0.0046	0.11
GO:0008152	BP	Metabolic process	335	91.3	0.0070	0.14
GO:0004812	MF	Aminoacyl-tRNA ligase activity	19	7.2	0.0075	0.14
GO:0016740	MF	Transferase activity	211	59.1	0.0087	0.14
GO:0019899	MF	Enzyme binding	19	7.1	0.0097	0.14
GO:0005216	MF	Ion channel activity	14	5.5	0.011	0.14
GO:0022838	MF	Substrate-specific channel activity	14	5.5	0.011	0.14
GO:0009308	BP	Amine metabolic process	47	15.2	0.011	0.14
GO:0004222	MF	Metalloendopeptidase activity	15	5.8	0.012	0.14
GO:0005938	CC	Cell cortex	15	5.8	0.012	0.14
GO:0008237	MF	Metallopeptidase activity	23	8.2	0.012	0.14
GO:0007275	BP	Multicellular organismal development	274	74.9	0.013	0.14
GO:0007165	BP	Signal transduction	97	28.8	0.013	0.14
GO:0044106	BP	Cellular amine metabolic process	40	12.9	0.019	0.19
GO:0044459	CC	Plasma membrane part	45	14.3	0.021	0.19
GO:0006520	BP	Cellular amino acid metabolic process	32	10.6	0.021	0.19
GO:0032879	BP	Regulation of localization	36	11.7	0.022	0.19
GO:0006140	BP	Regulation of nucleotide metabolic process	13	5.0	0.022	0.19
GO:0030811	BP	Regulation of nucleotide catabolic process	13	5.0	0.022	0.19
GO:0033121	BP	Regulation of purine nucleotide catabolic process	13	5.0	0.022	0.19
GO:0033124	BP	Regulation of GTP catabolic process	13	5.0	0.022	0.19
GO:0043087	BP	Regulation of GTPase activity	13	5.0	0.022	0.19
GO:0006793	BP	Phosphorus metabolic process	97	28.3	0.023	0.19
GO:0006796	BP	Phosphate metabolic process	97	28.3	0.023	0.19
GO:0042578	MF	Phosphoric ester hydrolase activity	42	13.4	0.024	0.19
GO:0016758	MF	Transferase activity, transferring hexosyl groups	26	8.8	0.024	0.19

Note.—Depletion results are shown in supplementary table S5, Supplementary Material online.