Table 3.
Similarity of D. shibae genes involved in PHA biosynthesis and metabolism to reference organisms.
| Locus tag D. shibae | Gene symbol | Description | Ralstonia eutropha H16 | Rhodobacter sphaeroides | ||||
|---|---|---|---|---|---|---|---|---|
| GenBank | E-value | Identity (%) | GenBank | E-value | Identity (%) | |||
| Dshi_2230 | phaR | Transcriptional regulator | CAJ92575.1 | 1.0E−19 | 38 | DQ003490.1 | 3.0E−83 | 68 |
| Dshi_2231 | phaP2 | Phasin | – | – | – | DQ003489.1 | 2.0E−28 | 43 |
| Dshi_2232 | phaP1 | Phasin | – | – | – | DQ003489.1 | 5.0E−42 | 70 |
| Dshi_2233 | phaC | PHB synthase | CAJ92572.1 | 3.0E−120 | 39 | DQ003488.1 | 0.0E+00 | 67 |
| Dshi_2234 | phaZ | PHB depolymerase | CAJ92291.1 | 1.0E−79 | 38 | DQ003491.1 | 0.0E+00 | 74 |
| Dshi_3066 | phaA | Beta-ketothiolase | CAJ92573.1 | 8.0E−140 | 60 | DQ003486.1 | 0.0E+00 | 80 |
| Dshi_3067 | phaB | Acetylactyl-CoA reductase | CAJ93268.1 | 1.0E−66 | 49 | DQ003487.1 | 1.0E−137 | 78 |
– indicates no similarity found in reference organisms.