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. 2014 Jun 17;14:169. doi: 10.1186/1471-2229-14-169

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Copyright © 2014 Wang et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Analyses of the detected genes and duplicated genes in 11 tissues. (a) Number of genes detected in each of the 11 tissues. SAM6D, SAM17D and SAM38D refer to the shoot apical meristem at 6, 17 and 38 day after germination, respectively; IBM and IAM refer to inflorescence before and after meiotic stage; OF: open flower; AM: axillary meristem. (b) Comparison of the 54,132 detected genes with the 46,430 high-confidence genes (Schmutz et al. [4]) and the previously reported 52,947 transcripts in soybean (Libault et al. [30]). (c) Comparison of the 54,132 detected genes with the previously designated 12,673 pseudogenes in soybean (Libault et al. [30]). (d) Distribution of the WGD and TD paralogs in 2–6 copies based on the predicted 66,210 genes in soybean genome. (e) Distribution of 9,728 WGD paralogs and 574 TD paralogs in pairs from the 54,132 detected genes. (f)T-test analysis of the significant difference of expression levels between two paralogs in the 8,768 detected paralogs.