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. 2014 Jun 17;15:10. doi: 10.1186/1471-2091-15-10

Table 1.

FeS cluster substitutions observed in sequence databases

Species Accession Cluster, position Substitution
M. barkeri
YP_305362
Proximal (4Fe4S)?, 1
Cys to Asp
G. metalloreducens
YP_006722286
Proximal (4Fe4S)?, 2
Cys to Asp
N. punctiforme
YP_001864093
Proximal (4Fe4S), 2
Cys to Asn
N. punctiforme
YP_001864093
Distal (4Fe4S), 1
His to Gln
N. punctiforme
YP_001864093
Medial (3Fe4S), 2
Pro to Lys*
D. baculatum YP_003157302 Medial (4Fe4S), 2 Pro to Cys

Putative FeS cluster ligating residues deviating from the standard pattern seen among two-subunit [NiFe]-hydrogenases. Each substitution is represented by multiple members; only one representative example is listed. Question marks indicate FeS cluster assignments that have not been confirmed. Asterisk (“*”) indicates a substitution not investigated in this study. The final entry represents [NiFeSe] hydrogenases, which do feature a cysteine in lieu of a proline.