Figure 1.

Module identification in day 0 samples and correlation of module expression with Salmonella shedding counts. A. Clustering dendrogram of genes showing module membership in colours. B. Module sizes and correlation of module eigengenes with trait, AULC of faecal Salmonella shedding counts. The module-wise correlations are provided along with the p-value of the correlation in cells coloured by the strength of the correlation. Modules significantly associated with the trait (absolute correlation greater than 0.3 and p-value less than 0.1) are indicated with an asterisk (*). C. Scatterplots of gene significance versus module membership for Salmonella shedding associated modules, along with correlations and p-values indicated. D. Gene co-expression patterns within Salmonella shedding associated modules. The samples are sorted from low to high based on shedding counts.