Table 2.
Top candidate genes associated with Salmonella shedding
| pink module | |||||||
| Ensembl ID | Gene symbol | GS | k d0_LS | k d0_PS | k d2_LS | k d2_PS | MM |
| ENSSSCG00000022236 | FOLR1 | -0.56 | 0.29 | 0.06 | 0.41 | 0.18 | 0.93 |
| ENSSSCG00000003259 | OSCAR | -0.51 | 0.27 | 0.04 | 0.64 | 0.10 | 0.92 |
| ENSSSCG00000029371 | C5AR1 | -0.49 | 0.27 | 0.07 | 0.49 | 0.16 | 0.92 |
| ENSSSCG00000011361 | (SLC26A6) | -0.57 | 0.26 | 0.06 | 0.74 | 0.14 | 0.92 |
| ENSSSCG00000021259 | CDA | -0.57 | 0.26 | 0.08 | 0.35 | 0.14 | 0.93 |
| ENSSSCG00000011296 | ANO10 | -0.58 | 0.25 | 0.15 | 0.45 | 0.13 | 0.91 |
| ENSSSCG00000021557 | (SULT1A4) | -0.60 | 0.25 | 0.08 | 0.67 | 0.20 | 0.91 |
| ENSSSCG00000002294 | ARG2 | -0.44 | 0.24 | 0.09 | 0.45 | 0.05 | 0.94 |
| ENSSSCG00000009002 | TLR2 | -0.43 | 0.24 | 0.07 | 0.11 | 0.17 | 0.94 |
| ENSSSCG00000000708 | TNFRSF1A | -0.52 | 0.23 | 0.07 | 0.35 | 0.15 | 0.94 |
| ENSSSCG00000003113 | C5AR2 | -0.61 | 0.23 | 0.12 | 0.70 | 0.09 | 0.93 |
| ENSSSCG00000003236 | SIGLEC5 | -0.51 | 0.23 | 0.08 | 0.53 | 0.11 | 0.94 |
| ENSSSCG00000009330 | ALOX5AP | -0.47 | 0.23 | 0.07 | 0.57 | 0.06 | 0.94 |
| ENSSSCG00000008701 | LREAP1 | -0.45 | 0.22 | 0.14 | 0.11 | 0.04 | 0.93 |
| ENSSSCG00000021837 | TMEM120A | -0.54 | 0.21 | 0.04 | 0.41 | 0.04 | 0.92 |
| grey60 module | |||||||
| Ensembl ID | Gene symbol | GS | k d0_LS | k d0_PS | k d2_LS | k d2_PS | MM |
| ENSSSCG00000012137 | BMX | -0.45 | 0.48 | 0.10 | 0.46 | 0.09 | 0.94 |
| ENSSSCG00000010952 | ZCCHC6 | -0.44 | 0.45 | 0.17 | 0.16 | 0.21 | 0.94 |
| ENSSSCG00000012440 | PGK1 | -0.50 | 0.45 | 0.05 | 0.21 | 0.22 | 0.95 |
| ENSSSCG00000027967 | IGSF6 | -0.48 | 0.45 | 0.06 | 0.22 | 0.15 | 0.95 |
| ENSSSCG00000011322 | CCR1 | -0.49 | 0.38 | 0.07 | 0.50 | 0.21 | 0.95 |
| ENSSSCG00000009542 | TNFSF13B | -0.46 | 0.35 | 0.04 | 0.34 | 0.21 | 0.95 |
| ENSSSCG00000022178 | (NUMB) | -0.49 | 0.35 | 0.07 | 0.37 | 0.24 | 0.96 |
| ENSSSCG00000006237 | SDCBP | -0.44 | 0.32 | 0.17 | 0.13 | 0.27 | 0.96 |
| ENSSSCG00000023374 | SRGN | -0.44 | 0.31 | 0.19 | 0.41 | 0.18 | 0.95 |
| ENSSSCG00000005462 | GNG10 | -0.45 | 0.29 | 0.07 | 0.40 | 0.24 | 0.95 |
| ENSSSCG00000027911 | LTB4R | -0.52 | 0.27 | 0.07 | 0.54 | 0.06 | 0.92 |
| ENSSSCG00000008168 | RNF149 | -0.46 | 0.26 | 0.07 | 0.24 | 0.21 | 0.92 |
GS: gene significance, k d0_LS and k d0_PS: gene connectivity in the day 0 network using low shedder samples and persistent shedder samples respectively and similarly k d2_LS and k d2_PS for the day 2 network, MM: module membership. Where the pig gene symbol is not available, the corresponding ortholog human gene symbol is provided.