Table S1.
Hardy-Weinberg equilibrium (HWE) of the single-nucleotide polymorphisms (SNPs) in the pentraxin-3 gene locus
SNP | Observed genotype counts | Observed allele counts | Minor allele frequency, % | Expected counts under HWE | Exact P |
---|---|---|---|---|---|
rs3845978 (n = 1,585) | AA = 34; AG = 306; GG = 1,245 | A = 374; G = 2,796 | 12 | AA = 22; AG = 330; GG = 1,233 | .01 |
rs2305619 (n = 1,583) | AA = 335; AG = 764; GG = 484 | A = 1,434; G = 1,732 | 45 | AA = 325; AG = 784; GG = 474 | .31 |
rs2120243 (n = 1,580) | AA = 237; AC = 740; CC = 603 | A = 1,214; C = 1,946 | 38 | AA = 233; AC = 748; CC = 599 | .71 |
rs1456099 (n = 1,582) | AA = 330; AT = 744; TT = 508 | A = 1,404; T = 1,760 | 44 | AA = 312; AT = 781; TT = 490 | .06 |
rs9289983 (n = 1,582) | AA = 311; AG = 719; GG = 554 | A = 1,341; G = 1,827 | 42 | AA = 284; AG = 773; GG = 525 | .01 |
rs2614 (n = 1,582) | AA = 5; AG = 55; GG = 1,522 | A = 65; G = 3,099 | 2 | AA = 1; AG = 64; GG = 1,518 | .00 |