. 2014 Jun 4;15(1):430. doi: 10.1186/1471-2164-15-430

Table 2.

Status of combinations (a) – (d), PAS, SGD and PolC in the non-Firmicutes organisms examined in this study

Organisms	Taxonomy	% of 10 kb segments along LeS with combinations^@				PAS	SGD		PolC (Y/N)
		(a)	(b)	(c)	(d)		SGD
		G > C	G > C	G ≤ C	G ≤ C		LeS	p^
		A > T	A ≤ T	A > T	A ≤ T		LeS	p^
Trend I
I. polytropus	Fusobacteria	82.8	5.9	1.5	9.8	Y	0.76	***	Y
S. termitidis		89.3	4.1	0.7	5.9	Y	0.73	***	Y
S. moniliformis		92.8	1.8	0.6	4.8	Y	0.84	***	Y
A. laidlawii	Tenericutes	94.6	4.0	0.7	0.7	Y	0.87	***	Y
M. florum		94.9	1.3	2.5	1.3	Y	0.89	***	Y
M. gallisepticum		72.9	8.3	13.5	5.2	Y	0.77	***	Y
U. parvum		66.7	13.3	5.3	14.7	Y	0.6	***	Y
U. urealyticum		66.7	10.3	6.9	16.1	Y	0.67	***	Y
Trend II
S. meliloti	Alphaproteobacteria	35.3	44.9	5.2	14.6	N	0.56	***	N
A. aromaticum	Betaproteobacteria	33.4	51.4	7.9	7.2	N	0.56	***	N
B. thetaiotaomicron	Bacteroidetes/ Chlorobi	30.2	60.5	2.4	6.9	N	0.52	NS	N
P. gingivalis		31.5	38.8	11.6	18.1	N	0.54	*	N
S. ruber		52.0	40.4	5.1	2.5	N	0.57	***	N
C. protochlamydia	Chlamydiae/ Verrucomicrobia	35.3	51.5	6.2	7.1	N	0.51	NS	N
C. trachomatis	Chlamydiae/ Verrucomicrobia	35.9	63.1	0.0	1.0	N	0.52	NS	N
T. thermophilus	Deinococcus-Thermus	30.7	53.4	2.7	13.2	N	0.51	NS	N
S. aciditrophicus	Deltaproteobacteria	44.5	38.8	3.2	13.6	N	0.56	***	N
E. minutum	Elusimicrobia	53.7	42.1	0.6	3.7	N	0.65	***	N
C. jejuni	Epsilonproteobacteria	47.0	39.0	3.1	11.0	N	0.6	***	N
H. hepaticus		40.8	48.0	1.7	9.5	N	0.57	***	N
W. succinogenes		31.3	66.7	0.0	2.0	N	0.59	***	N
A. sp.	Gammaproteobacteria	43.2	49.0	4.2	3.6	N	0.59	***	N
E. coli		38.2	49.5	7.1	5.2	N	0.55	**	N
F. tularensis		45.2	43.6	2.7	8.5	N	0.6	***	N
H. ducreyi		35.5	52.1	4.7	7.7	N	0.6	***	N
D. acetiphilus	Other Bacteria	29.8	57.5	3.7	9.0	N	0.56	***	N
L. borgpetersenii	Spirochaetes	33.2	57.6	4.5	4.8	N	0.56	***	N
T. denticola	Spirochaetes	39.6	40.6	3.2	16.6	N	0.55	***	N
Trend III
W. endosymbiont	Alphaproteobacteria	34.9	12.7	7.9	44.4	N	0.53	NS	N
A. aeolicus	Aquificae	42.6	11.0	9.0	37.4	N	0.52	NS	N
H. Y04AAS1		36.8	13.6	16.1	33.6	N	0.52	NS	N
P. marina		37.3	12.4	7.3	43.0	N	0.52	NS	N
S. YO3AOP1		45.6	3.3	9.9	41.2	N	0.56	***	N
F. nucleatum	Fusobacteria	71.9	2.3	2.3	23.5	N	0.58	***	Y
L. buccalis	Fusobacteria	68.3	2.9	2.0	26.8	N	0.6	***	Y
M. capricolum	Tenericutes	66.3	8.9	0.0	24.8	N	0.7	***	Y
M. mobile		52.6	9.2	15.8	22.4	N	0.57	**	Y
M. mycoides		59.7	5.0	9.2	26.1	N	0.63	***	Y
M. pulmonis		54.7	13.7	7.4	24.2	N	0.62	***	Y
F. nodosum	Thermotogae	36.6	6.2	17.0	40.2	N	0.53	NS	Y
K. olearia		32.5	3.5	24.6	39.5	N	0.54	*	Y
P. mobilis		44.9	13.9	6.5	34.7	N	0.53	NS	Y
T. africanus		34.3	9.0	24.9	31.8	N	0.56	***	Y
T. maritima		48.7	13.5	7.0	30.8	N	0.5	NS	Y
T. naphthophila		45.0	13.9	6.1	35.0	N	0.52	NS	Y
Trend IV
L. xyli	Actinobacteria	17.4	45.0	13.6	24.0	N	0.61	***	N
M. tuberculosis		22.1	63.6	5.5	8.9	N	0.58	***	N
S. coelicolor		18.6	47.2	19.9	14.3	N	0.55	***	N
A. phagocytophilum	Alphaproteobacteria	14.3	64.0	11.6	10.2	N	0.58	***	N
B. henselae		15.0	82.4	0.0	2.6	N	0.58	***	N
N. sennetsu		4.7	83.5	1.2	10.6	N	0.59	***	N
Z. mobilis		14.9	60.9	12.6	11.6	N	0.56	**	N
C. tepidum	Bacteroidetes/ Chlorobi	14.4	79.1	2.8	3.7	N	0.55	***	N
B. bronchiseptica	Betaproteobacteria	27.1	64.7	4.7	3.6	N	0.55	***	N
N. meningitidis		29.2	55.3	8.9	6.6	N	0.54	**	N
N. europaea		22.9	69.2	3.2	4.7	N	0.51	NS	N
P. necessarius		20.5	77.2	0.0	2.3	N	0.62	***	N
R. solanacearum		28.9	53.4	11.2	6.5	N	0.59	***	N
C. caviae	Chlamydiae/ Verrucomicrobia	15.5	78.5	0.9	5.2	N	0.52	NS	N
W. chondrophila	Chlamydiae/ Verrucomicrobia	18.0	78.7	1.0	2.4	N	0.51	NS	N
C. aggregans	Chloroflexi	15.3	62.4	12.0	10.3	N	0.53	*	N
D. CBDB1	Chloroflexi	15.1	73.4	3.6	7.9	N	0.52	NS	N
M. ruber	Deinococcus- Thermus	26.1	59.3	6.8	7.8	N	0.54	**	N
B. bacteriovorus	Deltaproteobacteria	26.4	72.0	0.5	1.1	N	0.56	***	N
D. psychrophila		9.4	84.7	1.7	4.3	N	0.53	*	N
G. sulfurreducens		22.6	54.2	10.8	12.4	N	0.64	***	N
L. intracellularis		17.2	77.2	0.7	4.8	N	0.5	NS	N
A. vinelandii	Gammaproteobacteria	15.3	66.7	8.2	9.7	N	0.56	***	N
S. amazonensis		19.2	77.8	0.9	2.1	N	0.56	***	N
X. fastidiosa		1.1	81.3	12.0	5.6	N	0.57	***	N
P. limnophilus	Planctomycetes	20.8	48.0	15.2	16.0	N	0.5	NS	N
R. baltica	Planctomycetes	13.2	57.4	23.0	6.4	N	0.51	NS	N
B. burgdorferi	Spirochaetes	11.0	87.9	1.1	0.0	N	0.66	***	N
S. smaragdinae	Spirochaetes	16.6	69.7	0.7	13.1	N	0.63	***	N
Trend V
A. capsulatum	Acidobacteria	16.4	38.1	21.3	24.2	N	0.5	NS	N
C. Solibacter	Acidobacteria	28.0	24.2	21.8	26.0	N	0.53	**	N
B. longum	Actinobacteria	20.5	32.6	38.4	8.5	N	0.54	**	N
N. farcinica	Actinobacteria	22.3	41.3	21.3	15.1	N	0.57	***	N
C. atlanticus	Bacteroidetes/ Chlorobi	47.8	20.5	2.7	29.0	N	0.51	NS	N
R. RS 1	Chloroflexi	17.9	41.2	26.0	14.8	N	0.51	NS	N
C. sp.	Cyanobacteria	24.3	20.8	28.4	26.5	N	0.51	NS	N
N. sp.		23.8	29.1	25.5	21.6	N	0.5	NS	N
P. marinus		6.0	71.4	0.0	22.6	N	0.52	NS	N
T. erythraeum		32.9	19.5	19.2	28.4	N	0.51	NS	N
D. geothermalis	Deinococcus- Thermus	16.7	48.4	11.8	23.2	N	0.51	NS	N
H. pylori	Epsilonproteobacteria	45.5	23.6	8.5	22.4	N	0.52	NS	N
C. Phytoplasma	Tenericutes	22.7	30.7	28.4	18.2	N	0.56	*	Y
M. synoviae		40.5	20.3	13.9	25.3	N	0.5	NS	Y
O. yellows		12.9	42.4	41.2	3.5	N	0.64	***	Y
T. lettingae	Thermotoga	37.6	30.1	4.2	28.2	N	0.51	NS	Y

^@: Bolds are significant at P < 0.05, italics are random.

^: p value ranges are: NS > 0.05, * <0.05, ** <0.01, *** <0.001.