Table 2. Comparison of COG distribution in the virulence genes with the B. melitensis 16 M genome COG distribution.
COG | B. melitensis genome | Virulence genes | Comparison |
Frequency(%) | Frequency(%) | P value | |
A | 1 (0.03) | 0 (0) | 1 |
B | 1 (0.03) | 0 (0) | 1 |
C | 172 (5.1) | 10 (6.25) | 0.51 |
D | 27 (0.80) | 0 (0) | 0.63 |
E | 326 (9.65) | 9.5 (5.94) | 0.15 |
F | 74 (2.2) | 10.5 (6.56) | 0.001* |
G | 187 (5.53) | 11.5 (7.19) | 0.29 |
H | 133 (3.93) | 3.5 (2.19) | 0.36 |
I | 114 (3.37) | 1 (0.63) | 0.06 |
J | 165 (4.88) | 3.3 (2.06) | 0.08 |
K | 190 (5.62) | 16.7 (10.44) | 0.008* |
L | 107 (3.17) | 5.5 (3.44) | 0.68 |
M | 169 (5.0) | 17 (10.62) | 0.002* |
N | 31 (0.92) | 7.5 (4.69) | <0.001* |
NC | 573 (16.95) | 11 (6.87) | <0.001* |
O | 121 (3.58) | 8.5 (5.31) | 0.18 |
P | 157 (4.65) | 3 (1.88) | 0.09 |
Q | 63 (1.86) | 1 (0.62) | 0.37 |
R | 318 (9.41) | 9 (5.62) | 0.10 |
S | 268 (7.94) | 10 (6.25) | 0.63 |
T | 92 (2.72) | 7 (4.38) | 0.45 |
U | 51 (1.50) | 12.5 (7.81) | <0.001* |
V | 38 (1.13) | 2 (1.25) | 0.70 |
W | 1 (0.03) | 0 (0) | 1 |
Total | 3379 (100) | 160 (100) |
P value obtained with chi-squared test and Fisher exact test,
*p-value ≤0.05. Abbreviations: COG: cluster of orthologous groups, A: RNA processing and modification, B: chromatin structure and dynamics, C: energy production and conversion, D: cell cycle control, cell division, chromosome partitioning, E: amino acid transport and metabolism, F: nucleotide transport and metabolism, G: carbohydrate transport and metabolism, H: coenzyme transport and metabolism, I: lipid transport and metabolism, J: translation, ribosomal structure and biogenesis, K: transcription, L: replication, recombination and repair, M: cell wall/membrane/envelope biogenesis, N: cell motility, NC: not in COG, O: posttranslational modifications, protein turnover, chaperones, P: inorganic ion transport and metabolism, Q: secondary metabolites biosynthesis, transport and catabolism, R: general function prediction only, S: function unknown, T: signal transduction mechanisms, U: intracellular trafficking, secretion and vesicular transport, V: defense mechanisms, W: extracellular structures.