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. 2014 Jun 25;9(6):e100349. doi: 10.1371/journal.pone.0100349

Table 2. Comparison of COG distribution in the virulence genes with the B. melitensis 16 M genome COG distribution.

COG B. melitensis genome Virulence genes Comparison
Frequency(%) Frequency(%) P value
A 1 (0.03) 0 (0) 1
B 1 (0.03) 0 (0) 1
C 172 (5.1) 10 (6.25) 0.51
D 27 (0.80) 0 (0) 0.63
E 326 (9.65) 9.5 (5.94) 0.15
F 74 (2.2) 10.5 (6.56) 0.001*
G 187 (5.53) 11.5 (7.19) 0.29
H 133 (3.93) 3.5 (2.19) 0.36
I 114 (3.37) 1 (0.63) 0.06
J 165 (4.88) 3.3 (2.06) 0.08
K 190 (5.62) 16.7 (10.44) 0.008*
L 107 (3.17) 5.5 (3.44) 0.68
M 169 (5.0) 17 (10.62) 0.002*
N 31 (0.92) 7.5 (4.69) <0.001*
NC 573 (16.95) 11 (6.87) <0.001*
O 121 (3.58) 8.5 (5.31) 0.18
P 157 (4.65) 3 (1.88) 0.09
Q 63 (1.86) 1 (0.62) 0.37
R 318 (9.41) 9 (5.62) 0.10
S 268 (7.94) 10 (6.25) 0.63
T 92 (2.72) 7 (4.38) 0.45
U 51 (1.50) 12.5 (7.81) <0.001*
V 38 (1.13) 2 (1.25) 0.70
W 1 (0.03) 0 (0) 1
Total 3379 (100) 160 (100)

P value obtained with chi-squared test and Fisher exact test,

*p-value ≤0.05. Abbreviations: COG: cluster of orthologous groups, A: RNA processing and modification, B: chromatin structure and dynamics, C: energy production and conversion, D: cell cycle control, cell division, chromosome partitioning, E: amino acid transport and metabolism, F: nucleotide transport and metabolism, G: carbohydrate transport and metabolism, H: coenzyme transport and metabolism, I: lipid transport and metabolism, J: translation, ribosomal structure and biogenesis, K: transcription, L: replication, recombination and repair, M: cell wall/membrane/envelope biogenesis, N: cell motility, NC: not in COG, O: posttranslational modifications, protein turnover, chaperones, P: inorganic ion transport and metabolism, Q: secondary metabolites biosynthesis, transport and catabolism, R: general function prediction only, S: function unknown, T: signal transduction mechanisms, U: intracellular trafficking, secretion and vesicular transport, V: defense mechanisms, W: extracellular structures.