Table 2.
Comparison of top ranked genes in different classifiers
| Gene name | PubMed hits | Rank in classifiersa |
|||
|---|---|---|---|---|---|
| Standard SVM | Basal | LumB/ ErbB2 | LumA/ LumB | ||
| ID1 | 38 | 878 | 19 | 770 | 686 |
| ATP1B1 | 5 | 88 | 22 | 459 | 1182 |
| CCL19 | 33 | 252 | 10 | 704 | 696 |
| HEY1 | 4 | 372 | 8 | 368 | 680 |
| MST1R | 3 | 783 | 6 | 741 | 1456 |
| ANO1 | 3 | 490 | 9 | 528 | 652 |
| FABP7 | 3 | 358 | 30 | 371 | 380 |
| KLK7 | 6 | 990 | 6 | 916 | 144 |
| KLK6 | 9 | 645 | 29 | 229 | 759 |
| NDRG1 | 56 | 414 | 1383 | 22 | 33 |
| FLT3 | 48 | 395 | 873 | 199 | 26 |
| SPP1 | 26 | 324 | 334 | 47 | 18 |
| TFF1 | 24 | 99 | 181 | 30 | 231 |
| HOXB13 | 7 | 89 | 659 | 21 | 1214 |
| ITGA2 | 5 | 64 | 247 | 12 | 12 |
| PEG10 | 5 | 97 | 745 | 28 | 53 |
| CKB | 5 | 286 | 16 | 27 | 1254 |
| IGFBP2 | 6 | 774 | 25 | 545 | 29 |
| PDGFRA | 144 | 43 | 26 | 82 | 1131 |
| GP5 | 12 | 23 | 18 | 120 | 311 |
| PBX1 | 8 | 28 | 407 | 134 | 21 |
| NUPR1 | 6 | 15 | 348 | 18 | 20 |
| ANXA3 | 4 | 18 | 1519 | 51 | 3 |
| BMPR1B | 2 | 30 | 1086 | 24 | 6 |
| MMP9 | 323 | 7 | 572 | 29 | 4 |
| ADAM8 | 15 | 24 | 160 | 3 | 2 |
| CYP1B1 | 14 | 26 | 43 | 34 | 170 |
| IGFBP5 | 11 | 33 | 23 | 11 | 104 |
| PRAME | 9 | 35 | 20 | 4 | 409 |
| CCL21 | 58 | 20 | 227 | 519 | 79 |
aBasal, LumB/ErbB2 and LumA/LumB represent the models displayed in cluster 1, 3 and 4, respectively, in Figure 5. Bold values indicate ranks less than 50.