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. Author manuscript; available in PMC: 2014 Oct 1.
Published in final edited form as: Surg Oncol Clin N Am. 2013 Jul 24;22(4):805–821. doi: 10.1016/j.soc.2013.06.001

Table 1.

Molecular classification of GIST.

Gene Incidence Anatomic location Imatinib sensitivity
Mutations in KIT (80%)
Exon 9 7% Small intestine, colon Yes, consider 800mg/day
Exon 11 65% All locations Yes
Exon 13 1% All locations Variable
Exon 17 1% All locations Variable
Mutations in PDGFRA (5–8%)
Exon 12 2% All locations Yes
Exon 14 <1% Stomach Yes
Exon 18 7% Stomach, mesentary, omentum D842V insensitive, most other sensitive
WT (12–15%)
BRAF V600E 7–15%* Stomach, small intestine Possibly
SDHA, SDHB, SDHC, SDHD 12%* Stomach, small intestine Usually not
Familiar GIST
KIT, rarely PDGFRA Very rare Small intestine Usually not
Syndromic GIST
Unknown gene (Carney Triad) Very rare Stomach Usually not
SDHB, SDHC, SDHD (Carney-Stratakis) Rare Stomach Usually not
NF1 (Neurofibromatosis-1) Rare Small intestine Usually not
*

indicates % of WT GISTs.

Data from Joensuu H, DeMatteo RP. The management of gastrointestinal stromal tumors: a model for targeted and multidisciplinary therapy of malignancy. Annu Rev Med. 2012;63:247–258.