Table 2.

List of the 15 larger networks resulting from merging the PCUs

Network	Genes and TFs	References
1	STE12,FUS3, GPA1, KSS1, DIG1, SST2, FAR1	[11,15]
2	SKO1, PTP3, HOG1, MSN2, WHI2, RCK2	[12,16]
3	GAL4, GAL3, GAL80, GAL1	[10]
4	SWI4,SWE1, CLB2, SWI6, CDC6	[13,17]
5	GCN4, GLN3, URE2	[14,18,19]
6	RAP1, TEL1, RIF2
7	INO4, INO2, TYE7
8	INO4, INO2, OPI1
9	SKN7, YAP1, TRR1, TRX2
10	PHO4, CLN3, PHO85, CRZ1
11	AFT1, SIT1
12	IME1, IME2
13	CBF4, MET4, MET30, MET32
14	MIG1, HXK2
15	RPN4, RPT2, RPT6, RPT3, RPT5, RPT1, SEM1, UBP6

Networks 1–5 have at least one dosage compensation structure satisfying all topological constraints. For these networks, the transcription factor involved in the structure is bolded, the two network components in that structure are italicized and references documenting the interactions among those components and the TF are listed in the rightmost column. If a network contains more than one such structure, only one is shown.