Table 3.
QTLs identified in each treatment
| QTL | Chr. | Position (cM) | Peak marker | LDV | LD | SDV | LOD | R 2 (%) | Add. eff. |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1BS | 15.4 | wPt-1374 | RRV (TRA–TS) | 3.00 | 9.6 | –0.03 | ||
| 2 | 1BL | 33.4 | Gpw4098 | FLA–BOOT | 3.64 | 18.5 | –6.05 | ||
| 1BL | 37.4 | Xgwm806 | RRP (FLA–BOOT) | 2.16 | 11.1 | 0.06 | |||
| 3 | 2BS | 54.3 | Xgwm128 | FLA–BOOT | 3.16 | 10.8 | –4.12 | ||
| 4 | 2BS | 22.2 | Xgwm682 | ANT (DAS) | 7.43 | 30.4 | –1.25 | ||
| 2BS | 22.2 | Xgwm682 | TRA–ANT | 4.59 | 17.5 | –25.03 | |||
| 2BS | 21.2 | Xgwm682 | TS–ANT | 3.34 | 11.8 | –30.00 | |||
| 2BS | 21.2 | Xgwm682 | TS–FLA | 3.00 | 9.6 | –24.70 | |||
| 2BS | 21.2 | Xgwm682 | TS–PEN | 2.85 | 9.2 | –22.72 | |||
| 2BS | 22.0 | Xgwm682 | LN TS | 2.62 | 10.1 | –0.10 | |||
| 2BS | 37.3 | wPt-5672 | TRA–ANT | 2.54 | 12.1 | –22.54 | |||
| 5 | 3BL | 107.1 | rPt-7068 | RRV (TRA–ANT) | 4.79 | 36.3 | –0.05 | ||
| 3BL | 97.0 | Xgwm131a | LN ANT | 3.28 | 7.2 | –0.42 | |||
| 3BL | 106.1 | wPt-7502 | LN afterTS | 2.71 | 11.8 | –0.16 | |||
| 6 | 3BL | 147.0 | wPt-6785 | LN ANT | 3.29 | 14.6 | 0.10 | ||
| 3BL | 142.2 | wPt-0065 | RRP (TS–PEN) | 3.18 | 13.2 | 0.01 | |||
| 3BL | 143.2 | wPt-0065 | TS–FLA | 3.14 | 10.4 | 25.75 | |||
| 3BL | 143.2 | wPt-0065 | TS–PEN | 3.08 | 10.1 | 23.80 | |||
| 3BL | 143.2 | wPt-0065 | TS–ANT | 2.64 | 9.2 | 26.52 | |||
| 3BL | 140.2 | wPt-0065 | TRA–ANT | 2.53 | 7.7 | 16.96 | |||
| 3BL | 128.5 | wPt-0142 | FLA–BOOT | 2.39 | 10.6 | 5.06 | |||
| 3BL | 142.2 | wPt-0065 | RRP (TS–ANT) | 2.37 | 9.9 | 0.01 | |||
| 3BL | 140.2 | wPt-0065 | RRP (TS–FLA) | 2.33 | 10.7 | 0.01 | |||
| 7 | 4BS | 29.2 | wPt-4931 | TRA–TS | 4.22 | 18.3 | 24.89 | ||
| 4BS | 22.8 | wPt-4931 | LN TS | 2.85 | 20.1 | 0.17 | |||
| 4BS | 29.2 | wPt-4931 | TS–ANT | 2.81 | 9.8 | –32.51 | |||
| 4BS | 27.8 | wPt-4931 | RRP (TS–ANT) | 2.28 | 10.3 | –0.01 | |||
| 4BS | 37.9 | Xdupw23 | FLA–BOOT | 2.25 | 8.8 | –5.34 | |||
| 4BS | 26.8 | wPt-4931 | RRP (TRA–TS) | 2.16 | 11.2 | 0.04 | |||
| 8 | 5AS | 2.0 | F118 | FLA–BOOT | 3.00 | 13.6 | –4.32 | ||
| 9 | 5AL | 72.8 | 343987 | LN TS | 3.00 | 7.4 | 0.26 | ||
| 10 | 5AL | 0.0 | Xcfd30a | RRV (TRA–TS) | 13.73 | 58.0 | –0.08 | ||
| 5AL | 0.0 | Xcfd30a | RRV (TRA–ANT) | 12.31 | 45.9 | –0.06 | |||
| 5AL | 0.0 | Xcfd30a | TRA–ANT | 10.45 | 37.5 | –105.64 | |||
| 5AL | 0.0 | Xcfd30a | LN ANT | 8.59 | 28.0 | –0.88 | |||
| 5AL | 0.0 | Xcfd30a | AvgPHY | 6.78 | 27.9 | –1.99 | |||
| 5AL | 0.0 | Xcfd30a | LN TS | 6.67 | 25.9 | –0.49 | |||
| 5AL | 0.0 | Xcfd30a | LN afterTS | 3.07 | 13.2 | –0.18 | |||
| 11 | 5AL | 45 | wPt-6071 | TRA–ANT | 5.03 | 18.6 | –72.35 | ||
| 5AL | 45.1 | wPt-6071 | LN TS | 4.56 | 18.7 | –0.42 | |||
| 5AL | 39.1 | wPt-1189 | RRV (ANT) | 4.45 | 17.5 | –0.04 | |||
| 5AL | 45.0 | wPt-6071 | LN ANT | 3.48 | 13.0 | –0.59 | |||
| 5AL | 34.0 | wPt-1189 | AvgPHY | 2.90 | 14.2 | 0.53 | |||
| 5AL | 39.1 | wPt-1189 | AvgPHY | 2.49 | 11.2 | –1.25 | |||
| 12 | 5AL | 21.8 | Xcfa2141 | RRV (TRA–TS) | 3.45 | 13.6 | –0.04 | ||
| 13 | 6AS | 1.0 | tPt-6278 | PEN–ANT | 3.3 | 14.5 | –0.93 | ||
| 14 | 7BL | 70.0 | Xgwm783 | LN ANT | 4.11 | 19.0 | –0.18 | ||
| 7BL | 69.7 | Xgwm783 | RRV (PEN–ANT) | 3.18 | 15.3 | –0.03 | |||
| 7BL | 77.0 | rPt-3887 | LN TS | 3.10 | 13.7 | –0.13 | |||
| 7BL | 69.7 | Xgwm783 | PEN–ANT | 2.39 | 10.0 | –9.99 | |||
| 15 | 2AS | 35.0 | wPt-9624 | LN ANT | 3.00 | 10.0 | 0.51 | ||
| 2AS | 38.0 | Xgwm817 | TS–ANT | 2.07 | 8.9 | –3.97 | |||
| 2AS | 46.5 | Xwmc261c | LNTS | 2.32 | 7.9 | 0.26 |
Bold indicates those associated with LOD ≥3; italic indicates those associated with LOD <3. Add. eff.: Additive effect of the Ofanto allele; ANT: anthesis; AvgPHY: phyllochron relative to all the leaves; LDV: long days, vernalized plants; LD: long days, nonvernalized plants; SDV: short days, vernalized plants; LOD: limit of detection; BOOT: booting; FLA: flag leaf; LN: leaf number; PEN: penultimate leaf; RRP: response to photoperiod; RRV: response to vernalization; TRA: transplanting; TS: terminal spikelet.