Table 1.
Stem rust resistance loci identified in 21 studies including 24 mapping populations, three association panels, and two BC2 populations
| Sr locus name | Phenotypic variation (R^2) | Chromosome | Start | End | Resistance carrier | Population | References | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Marker | Position cM | Marker | Position cM | ||||||||
| Biparental population | QSr.Sun-5BL | 12 % | 5BL* | ksuHb9 | 34.2 | glk0354 | 44.8 | Arina | Arina/Forno | Bansal et al. (2008) | |
| QSr.Sun-7DS | 26 % | 7DS* | cdo0475b | 90.2 | gwm1002 | 94.8 | Arina | ||||
| Across all data set | QSr.Sun-3BS | 9–15 % | 3BS | wPt-8093 | 31.4 | gwm566 | 61 | HD2009 | HD2009/WL711 | Kaur et al. (2009) | |
| QSr.Sun-5DL | 20–44 % | 5DL | gwm182 | 60.2 | SrHD | 85.3 | HD2009 | ||||
| QSr.Sun-7A | 7–13 % | 7A* | wPt-3992 | 136.1 | gwm260 | 157.3 | HD2009 | ||||
| Envir. specific | QSr.Sun-2B | 8–13 % | 2B | wPt-4892 | 99 | wPt-4892 | 104.4 | HD2009 | |||
| QSr.Sun-5B | 11–15 % | 5BS* | wPt-6136 | 6 | wPt-5346 | 34.1 | HD2009 | ||||
| QSr.Sun-4B | 9 % | 4B | wPt-5559 | 6 | wPt-8756 | 8.4 | WL711 | ||||
| QSr.Sun-lD | 12 % | ID* | wPt-4687 | 4.9 | – | – | HD2009 | ||||
| Sr30 | – | 5DL* | CFD12 | 9 | gwm292 | 16 | Webster | RL6071/Webster | Hiebert et al. (2010) | ||
| SrWeb | – | 2BL | gwm47 | 1.4 | wmc332 | 12.4 | Webster | ||||
| – | – | 1A | wPt-0128 | – | wPt-734078 | – | Kingbird | PBW343/Kingbird | Bhavani et al. (2011) | ||
| – | – | 3BS | wPt-3921 | – | wPt-2757 | – | Kingbird | ||||
| – | 51.2 | 5BL | wPt-2607 | – | wPt-1733 | – | Kingbird | ||||
| – | – | 7A | wPt-8670 | – | wPt-744574 | – | Kingbird | ||||
| – | – | 7DS | wPt-1859 | – | wPt-731810 | – | Kingbird | ||||
| – | 6 | 2D* | barc095 | – | – | – | Kiritaki | PBW343/Kiritaki | |||
| – | 25 | 3BS* | SW58 | – | – | Kiritaki | |||||
| – | 8 | 5BL* | barc109 | – | – | Kiritaki | |||||
| – | 12 | 7D | Lr34-linked | – | – | – | Kiritaki | ||||
| – | – | 2B* | wPt-7829 | – | wPt-2266 | – | Juchi | PBW343/Juchi | |||
| – | – | 3BS | wPt-8056 | – | wPt-800213 | – | Juchi | ||||
| – | 42.4 | 4A | wPt-5124 | – | wPt-6390 | – | Juchi | ||||
| – | – | 5BL | wPt-0750 | – | wPt-5896 | – | Juchi | ||||
| – | – | 6B | wPt-5480 | – | wPt-9532 | – | Juchi | ||||
| – | 6.8 | 2B | – | – | wmc257 | – | Huirivis#1 | PBW343/Huirivis#1 | |||
| – | 16 | 3BS* | – | – | SW3648 | – | Huirivis#1 | ||||
| – | 23 | 5BL* | wms371 | – | NW2012ND | – | Huirivis#1 | ||||
| – | 6.9 | 7B* | – | – | NW3109ND | – | Huirivis#1 | ||||
| – | – | 2B | wPt-744022 | – | wPt-1964 | – | Muu | PBW343/Muu | |||
| – | 46 | 3BS | wPt-666139 | – | wPt-3921 | – | Muu | ||||
| – | – | 5BL | wPt-6014 | – | wPt-3661 | – | Muu | ||||
| – | – | 1BL | wPt-1560 | – | wPt-7486 | – | Pavon76 | Avocet/Pavon76 | |||
| – | 68.9 | 3BS | wPt-8093 | – | wPt-7212 | – | Pavon76 | ||||
| – | – | 5A | wPt-6048 | – | wPt-4249 | – | Pavon76 | ||||
| – | – | 6B | wPt-1541 | – | wPt-0171 | – | Pavon76 | ||||
| Sr28 | – | 2BL | wcm332 | 0 | wPt-7004 | 7.6 | SD1691 | SD1691/LMPG-6 | Rouse et al. (2012) | ||
| Sr42 | – | 6BS* | barc183 | 5.5 | FSD_RSA | 6 | Norin 40 | Norin 40/LMPG-6 | Ghazvini et al. (2012) | ||
| – | 15.1 | 1BL* | wPt-8894 | – | wPt-6015 | – | – | PBW343/Kenya Nyangumi | |||
| – | 22.4 | 2BL | wPt-2274 | 118.2 | wPt-2135 | 118.2 | – | ||||
| – | 8.8 | 3BS | wPt-800213 | 23.3 | wPt-742648 | 26.7 | – | ||||
| – | 33.7 | 5BS* | wPt-8604 | 25.6 | wPt-7542 | – | – | ||||
| – | 56.9 | 6BS | wPt-4283 | 5 | wPt-7207 | 7 | – | ||||
| – | 6.6 | 7AS | wPt-742244 | 2.9 | wPt-672171 | 5.6 | – | ||||
| – | 10 | 7BL | wPt-0138 | 120.6 | wPt-4258 | – | – | ||||
| – | 24.3 | 1B* | wPt-0320 | – | wPt-1911 | – | – | PBW343/Cross Bill | |||
| – | 14.8 | 3BL* | wPt-8105 | – | wPt-10003 | – | – | ||||
| – | 23.5 | 3BL | wPt-6047 | – | wPt-9433 | – | – | ||||
| – | 55.3 | 3BS* | wPt-3609L3R3 | – | wPt-3609L2R2 | – | – | ||||
| – | 8.6 | 6BS | wPt-5461 | – | barc79 | – | – | ||||
| – | 19.4 | 3BS | wPt-6043 | 14.2 | wPt-742337 | 15.6 | – | PBW343/Diniza | |||
| – | 50.3 | 3BS* | wPt-2220 | 67.3 | wPt-4364 | 68.6 | – | CIMMYT unpublished | |||
| – | 7.8 | 7AL | wPt-741686 | 150.9 | wPt-7763 | 168.5 | – | ||||
| – | 20.9 | 1AL* | wPt-732616 | 133.1 | wPt-4065 | 113.4 | – | PBW343/Kenya Swara | |||
| – | 22.4 | 3BS* | wPT-800213 | 17.1 | wPt-3921 | 26.7 | – | ||||
| – | 31.2 | 6AS | wPt-669498 | 0 | wPt-6520 | 2.5 | – | ||||
| – | 5.4 | 7AL | wPt-6495 | 150.9 | wPt-741686 | 154.8 | – | ||||
| – | 4.2 | 7DS* | wPt-743395 | – | wPt-742859 | – | – | PBW343/Kenya Kudu | |||
| – | 12 | 1AS | wPt-0512 | 4.6 | wPt-1770 | – | – | ||||
| – | 17 | 2BL | wcm474 | 54.4 | wPt-2600 | 70.4 | – | ||||
| – | 15 | 3AL | wPt-9154 | 73.4 | cfd2 | – | – | ||||
| – | 30 | 3BS | gwm533 | – | wPt-3921 | 17.1 | – | ||||
| – | 12 | 5BL | wPt-0750 | 102.7 | wPt-3114 | 117.6 | – | ||||
| – | 10 | 7BL | wPt-8007 | 140.8 | wPt-5460 | 145.2 | – | ||||
| – | 23.8 | 1BL | wPt-1560 | 8.6 | wPt-7486 | – | Pavon76 | Avocet/Pavon76 | Njau et al. (2013) | ||
| – | 6 | IDS | wPt-7140 | 57.1 | wPt-5320 | 60.7 | Pavon76 | ||||
| – | 7 | 2AL | wPt-7024 | 71 | wPt-7011 | 76 | Pavon76 | ||||
| – | 5.5 | 2BL* | wPt-4125 | 82.7 | wPt-1505 | 102.4 | Pavon76 | ||||
| – | 51.8 | 3BS | wPt-1081 | 17.1 | wPt-3781 | 24.9 | Pavon76 | ||||
| – | 18.1 | 7BL | wPt-4319 | 143 | wPt-3190 | – | Pavon76 | ||||
| QSr.cdl-1AL | – | 1AL | wPt-0827 | – | wPt6869 | – | Thatcher | Thatcher/McNeal | Rouse et al. (2014) | ||
| QSr.cdl-3BS (Sr12) | – | 3BS | gpw1120 | – | wPt4082 | – | Thatcher | ||||
| QSr.cdl -2BS | – | 2BS | wPt-2106 | – | cfd238 | – | Thatcher | ||||
| Sr57 (Lr34) | – | 7DS* | csffr6 | – | – | – | McNeal | ||||
| QSr.ipk-1A | 3.7 | 1AL | Xbarcl48 | 121.6 | Xbarc119 | 137.7 | Sebatel | Kristal/Sebatel (durum) | Haile et al. (2012) | ||
| QSr.ipk-2A | 3.9 | 2AS* | Xgwm448 | 66 | Xgwm1198 | 79.5 | Sebatel | ||||
| QSr.ipk-3B | 8.6 | 3BS* | Xgwm779 | 0 | Xgwm389 | 9.6 | Sebatel | ||||
| QSr.ipk-4B | 3.8 | 4BL* | Xgwm1167 | 24.6 | Xgwm1278 | 83.1 | Sebatel | ||||
| QSr.ipk-5B | 3.7 | 5BL | Xgwm408 | 56 | Xbarc142 | 83.1 | Sebatel | ||||
| QSr.ipk-6A | 6.5 | 6AL* | Xgwm494 | 104.7 | Xgwm11150 | 124.7 | Sebatel | ||||
| QSr.ipk-7A.1 | 3.9 | 7A* | Xgwm974 | 106.3 | Xgwm631 | 120.8 | Sebatel | ||||
| QSr.ipk-7A.2 | 3.4 | 7AL | Xbarc121 | 144.2 | Xgwm984 | 154.4 | Sebatel | ||||
| QSr.ipk-7B | 7.3 | 7 BL* | Xgwm146 | 127.7 | Xgwm344 | 152.6 | Sebatel | ||||
| – | 14.5 | 4B* | wPt-0872 | – | – | – | – | Sachem/Strongfield (durum) | Singh et al. (2013a) | ||
| QSr.spa-4B.1 | 2.4-6.1 % | 4B* | wPt-744434 | 62.3 | Xwmc-617 | 89.4 | Carberry | AC Cadillac/Carberry | Singh et al. (2013b) | ||
| QSr.spa-6D | 3.9-48.8 % | 6D* | wPt-664770 | 0 | wPt-1695 | 9.7 | AC Cadillac | ||||
| Association mapping | 12 | 1BS | wPt-1560 | 8.6 | wPt-5678 | 33.7 | – | LD-SRRSN (Spring) | Yu et al. (2011) | ||
| 7 | 2BL | wPt-7200 | 82 | wPt-8460 | 101 | – | |||||
| 8 | 3BS | wPt-6945 | 57 | wPt-1940 | 68 | – | |||||
| 7 | 3BS | csSr2 | 0 | wPt-8446 | 11 | – | |||||
| 6 | 4AL | wPt-5857 | 68 | wPt-5749 | 72 | – | |||||
| 5 | 5BS | wPt-1149 | 31 | wPt-5346 | 33 | – | |||||
| 5 | 6AL | wmc417 | 88 | gwm617 | 97 | – | |||||
| 5 | 6AS | wPt-6520 | 2 | wPt-4016 | 4 | – | |||||
| 14 | 6BS | wPt-3774 | 0 | wPt-1922 | 4 | – | |||||
| 11 | 6BS | wPt-5333 | 31 | wPt-5037 | 57 | – | |||||
| 12 | 7BL | wPt-5343 | 126.1 | wPt-7351 | 126.8 | – | |||||
| 14 | 7DL | wPt-1859 | 116 | wPt-7351 | 126.8 | – | |||||
| 15 | 7DL | wPt-7763 | 160 | wPt-664017 | 175 | – | |||||
| 8 | 7DS | wPt-2565 | 1.4 | wPt-665260 | 5 | – | |||||
| 6 | 1AS | wPt-730213 | 0.2 | wPt-730213 | 0.2 | – | LD-SRRSN (Winter) | ||||
| 7 | 2BS | wPt-4916 | 2 | wPt-1964 | 25 | – | |||||
| 8 | 3BS | csSr2 | 0 | wPt-8446 | 11.4 | – | |||||
| 5 | 4AL | wPt-3349 | 84.5 | wPt-7807 | 87.8 | – | |||||
| 5 | 5BS | wPt-1302 | 1 | wPt-3873 | 27 | – | |||||
| 5 | 6BL | wPt-6116 | 107 | wPt-6116 | 107 | – | |||||
| 6 | 6BS | wPt-4930 | 9 | wPt-1241 | 24 | – | |||||
| 5 | 6BS | wPt-4648 | 51 | wPt-4648 | 51 | – | |||||
| 6 | 7BS | wPt-0138 | 18.9 | wPt-0138 | 18.9 | – | |||||
| 10 | 7DS | csLV34 | 50.5 | csLV34 | 50.5 | – | |||||
| Sr31 | – | 1BS | wPt-8949 | 11.4 | wPt-8616 | 32.3 | – | ESWYT | Crossa et al. (2007) | ||
| Sr19,23,36,40 | – | 2B | wPt-0100 | 17.7 | – | – | – | ||||
| Sr19,23,36,40 | – | 2B | wPt-9402 | 57.8 | – | – | – | ||||
| Sr2,12 | – | 3B* | wPt-0365 | 44 | wPt-8983 | 44 | – | ||||
| Sr2,12 | – | 3B* | wPt-6802 | 56.9 | – | – | – | ||||
| – | – | 4AS | wPt-2788 | 58 | – | – | – | ||||
| – | – | 4AL | wPt-2084 | 161 | wPt-7807 | 161.7 | – | ||||
| – | – | 4BS | wPt-8650 | 7.8 | – | – | – | ||||
| – | – | 5BL | wPt-4996 | 82.8 | – | – | – | ||||
| Sr13, 26 | – | 6AL | wPt-7623 | 38 | – | – | – | ||||
| – | – | 6BS | wPt-7662 | 36.8 | wPt-7777 | 41.9 | – | ||||
| – | – | 6BS | wPt-3733 | 87.5 | – | – | – | ||||
| Sr11 | – | 6BL | wPt-0171 | 171.4 | wPt-1541 | 181 | – | ||||
| Sr17 | – | 7B | wPt-1149 | 64.7 | – | – | – | ||||
| Sr17 | – | 7B | wPt-5343 | 99 | – | – | – | ||||
| Sr17 | – | 7B | wPt-0600 | 114.3 | – | – | – | ||||
| Sr44 | – | 7D | wPt-2565 | 1.3 | – | – | – | ||||
| – | 4.6 | 1BS* | barc8 | 32 | – | – | – | AM durum panel | Letta et al. (2013) | ||
| – | 3.9 | 2AS* | gwm1045 | 87.7 | – | – | – | ||||
| – | 4.1 | 2BL* | wmc356 | 220 | – | – | – | ||||
| – | 3.3 | 3AS | wPt-7992 | 8 | – | – | – | ||||
| – | 4 | 3AL* | wmc388 | 85.6 | – | – | – | ||||
| – | 4.1 | 5AL* | gwm126 | 93.3 | – | – | – | ||||
| – | 4.4 | 5AL | gwm291 | 111.7 | – | – | – | ||||
| – | 3.5 | 6AL | gwm427 | 139.5 | – | – | – | ||||
| – | 7.1 | 6AL* | CD926040 | 144 | – | – | – | ||||
| – | 4.5 | 6AL* | barc104 | 155.3 | – | – | – | ||||
| – | 5.2 | 7AS* | wPt-2799 | 38.2 | – | – | – | ||||
| – | 1.5 | 7AS* | wPt-7785 | 94.8 | – | – | – | ||||
| Direct back crossing | SrTA10187 | – | 6DS* | Xcfd49 | 5.4 | Xbarc173 | 20.9 | Aa. tauschii- TA10187 | BC2-TA10187/KS05HW14 | Olson et al. (2013) | |
| SrTA10171 | – | 7DS* | – | – | Xwmc827 | 0.9 | Aa. tauschii- TA10171 | BC2-TA10171/KS05HW14 | |||
* indicates QTL that are not displayed on the map