Skip to main content
. 2014 Jun 24;5(3):e01241-14. doi: 10.1128/mBio.01241-14

TABLE 5 .

SNPs and indels identified in variants with potential phenotype correlation relative to the Nigg genome (Genbank accession no. AE002160)a

SNP location Gene locant: protein encoded Gene start (NT) Gene stop (NT) CmVar001
CmVar001.1
CmVar002
CmVar003
CmVar004
NT change AA change NT change AA change NT change AA change NT change AA change NT change AA change
58847 TC_0052: major outer membrane protein, porin 58653 59816 C→A G→C C→A G→C
58899 TC_0052: major outer membrane protein, porin 58653 59816 A→ DEL A→ DEL
58900 TC_0052: major outer membrane protein, porin 58653 59816 A→ DEL A→ DEL
58901 TC_0052: major outer membrane protein, porin 58653 59816 G→ DEL G→ DEL
58902 TC_0052: major outer membrane protein, porin 58653 59816 C→ DEL C→ DEL
58903 TC_0052: major outer membrane protein, porin 58653 59816 T→ DEL T→ DEL
59061 TC_0052: major outer membrane protein, porin 58653 59816 T→ DEL T→ DEL T→ DEL
59062 TC_0052: major outer membrane protein, porin 58653 59816 G→ DEL G→ DEL G→ DEL
59063 TC_0052: major outer membrane protein, porin 58653 59816 T→ DEL T→ DEL T→ DEL
187432 TC_0155: 3′(2′),5′-bisphosphate nucleotidase, putative 187163 188212 G→A H→Y G→A H→Y G→A H→Y
187984 TC_0155: 3′(2′),5′-bisphosphate nucleotidase, putative 187163 188212 C→T G→S
381736 Intergenic: NA NA NA T→A NA→NA
473191 TC_0412: conserved hypothetical protein 472757 473854 →A FS →A FS
473705 TC_0412: conserved hypothetical protein 472757 473854 G→ FS G→ FS G→ FS
798169 TC_0668: conserved hypothetical protein 797014 798240 T→G F→V
814976 TC_0682: tetraacyldisaccharide 4′-kinase 814899 816008 C→A V→L C→A V→L C→A V→L
1004276 TC_0867: conserved hypothetical protein 1002965 1004440 T→C S→P T→C S→P T→C S→P T→C S→P
1062351 Intergenic NA NA C→A NA→NA C→A NA→NA C→A NA→NA
a

Mutations common to all variants are excluded (see Table S1 in the supplemental material for the entire list). Chlamydial variants are arranged from highest growth rate to lowest (left to right). Gross pathology results also followed this pattern. FS, frameshift; DEL, deletion; INS, insertion; NA, not applicable (intergenic); NT change, nucleotide change; AA change, amino acid change.