. 2014 Jun 24;5(3):e01241-14. doi: 10.1128/mBio.01241-14

TABLE 5 .

SNPs and indels identified in variants with potential phenotype correlation relative to the Nigg genome (Genbank accession no. AE002160)^a

SNP location	Gene locant: protein encoded	Gene start (NT)	Gene stop (NT)	CmVar001		CmVar001.1		CmVar002		CmVar003		CmVar004
SNP location	Gene locant: protein encoded	Gene start (NT)	Gene stop (NT)	NT change	AA change	NT change	AA change	NT change	AA change	NT change	AA change	NT change	AA change
58847	TC_0052: major outer membrane protein, porin	58653	59816							C→A	G→C	C→A	G→C
58899	TC_0052: major outer membrane protein, porin	58653	59816							A→	DEL	A→	DEL
58900	TC_0052: major outer membrane protein, porin	58653	59816							A→	DEL	A→	DEL
58901	TC_0052: major outer membrane protein, porin	58653	59816							G→	DEL	G→	DEL
58902	TC_0052: major outer membrane protein, porin	58653	59816							C→	DEL	C→	DEL
58903	TC_0052: major outer membrane protein, porin	58653	59816							T→	DEL	T→	DEL
59061	TC_0052: major outer membrane protein, porin	58653	59816	T→	DEL	T→	DEL	T→	DEL
59062	TC_0052: major outer membrane protein, porin	58653	59816	G→	DEL	G→	DEL	G→	DEL
59063	TC_0052: major outer membrane protein, porin	58653	59816	T→	DEL	T→	DEL	T→	DEL
187432	TC_0155: 3′(2′),5′-bisphosphate nucleotidase, putative	187163	188212	G→A	H→Y	G→A	H→Y	G→A	H→Y
187984	TC_0155: 3′(2′),5′-bisphosphate nucleotidase, putative	187163	188212							C→T	G→S
381736	Intergenic: NA	NA	NA									T→A	NA→NA
473191	TC_0412: conserved hypothetical protein	472757	473854							→A	FS	→A	FS
473705	TC_0412: conserved hypothetical protein	472757	473854	G→	FS	G→	FS	G→	FS
798169	TC_0668: conserved hypothetical protein	797014	798240									T→G	F→V
814976	TC_0682: tetraacyldisaccharide 4′-kinase	814899	816008	C→A	V→L	C→A	V→L	C→A	V→L
1004276	TC_0867: conserved hypothetical protein	1002965	1004440	T→C	S→P	T→C	S→P	T→C	S→P			T→C	S→P
1062351	Intergenic	NA	NA	C→A	NA→NA	C→A	NA→NA	C→A	NA→NA

^{^a}

Mutations common to all variants are excluded (see Table S1 in the supplemental material for the entire list). Chlamydial variants are arranged from highest growth rate to lowest (left to right). Gross pathology results also followed this pattern. FS, frameshift; DEL, deletion; INS, insertion; NA, not applicable (intergenic); NT change, nucleotide change; AA change, amino acid change.