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Comparison of NextClip and Skewer in processing Nextera long mate-pair (LMP) reads (ERA264981)
|
Reads for scaffolding |
Time for trimming adapters from Nextera LMP library (s) |
Assembly |
||
|---|---|---|---|---|
| Pieces | N50 length | Total length (Mbp) | ||
| None |
N/A |
14097 |
19150 |
105.80 |
| Paired end (PE) only |
N/A |
11781 |
23496 |
104.84 |
| PE and NextClip processed |
1480.39 |
6080 |
309342 |
111.55 |
| PE and Skewer processed |
993.49 (single thread) |
5806 |
312317 |
112.52 |
| 155.96 (8 threads) | ||||
