Table 3.

SNVs and indels in relevance to cancer

Sample	Chr	Gene name	Position	Coding event	Sequence change	Substitution
CLN2	3	CPB1	150045158	SNV	G/A	R231Q
	6	ESR1	152423875	SNV	C/T	T431I
	10	TCF7L2	114907771	SNV	G/A	G424E
	11	INPPL1	71621016	SNV	A/G	E567G
	12	KRAS	25289548	SNV	C/T	G13D
	14	TGFβ3	75495381	SNV	G/T	Q381K
	18	BCL2	59136317	SNV	C/A	W188L
	18	PTPRM	8384547	SNV	G/A	V1415M
	10	MYST4	76460457	SNV	C/T	R1957W
	18	SMAD4	46858795	SNV	T/G	L540R
	19	SHANK1	55864301	SNV	G/A	R910C
	21	HUNK	32293208	SNV	G/A	R662Q
	3	PIK3CA	180399422	SNV	G/A	NA
	1	PTPRC	196985273	SNV	G/A	S852N
	13	MLNR	48693327	Indel	cccgg−/−ccgcc	Insertion
	2	SLC4A10	162427730	Indel	atcag−/−aaaa	Insertion
	6	UTRN	145111149	Indel	AAAT-g-GGAAA	Frameshift
	7	HNRNPA2B1	26202550	Indel	CAGAT-cctcc-TCTAA	Frameshift
CLN3	1	ARID1A	26973896	SNV	G/T	E1531
	2	LRP2	169845248	SNV	T/C	N400S
	3	MITF	70011193	SNV	C/G	S92C
	4	INPP4B	143222686	SNV	C/A	E864
	5	GPR98	89974441	SNV	G/T	V787L
	7	CYLN2	73409559	SNV	C/A	S344Y
	10	PTPRE	129758044	SNV	G/A	R369Q
	12	KRAS	25289551	SNV	C/T	G12D
	4	MAML3	26202550	Indel	AAAT-ctg-CTGCT	AA_Deletion
	6	PGC	140871034	Indel	CCTGC-aga-AGAGC	AA_Deletion
CLN4	1	ARID4B	233412380	SNV	C/A	R826M
	3	PIK3CA	180434779	SNV	A/G	H1048R
	4	KDR	55655861	SNV	G/A	R946C
	5	APC	112129944	SNV	G/T	G53V
	5	APC	112201150	SNV	C/T	Q654
	5	APC	112203580	SNV	G/T	E1464
	5	APC	112205360	SNV	A/G	K2057R
	6	PTCRA	42998820	SNV	G/T	V46F
	12	KRAS	25289552	SNV	C/A	G12C
	2	HOXD9	176696536	Indel	cagcc-/gcagc	Insertion