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. Author manuscript; available in PMC: 2015 Jun 15.
Published in final edited form as: J Comput Chem. 2014 Apr 18;35(16):1219–1239. doi: 10.1002/jcc.23611

Figure 12.

Figure 12

Analysis of DNA sequence specific effects. (A) Percent BII conformation and (B) percent north conformation of the sugar moiety, as functions of nucleotide for EcoR1 from experiments and from the MD simulations using the C36 (blue) and Drude (green) force fields. Data for the symmetrically related base-pair steps have been combined.