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. Author manuscript; available in PMC: 2014 Jun 30.

Published in final edited form as: Infect Genet Evol. 2012 Mar 8;12(5):1037–1045. doi: 10.1016/j.meegid.2012.02.019

Table 5.

Branch-site tests of adaptive evolution.

	Null model		Selection model		Likelihood ratio tests
	N parameters	lnL	N parameters	lnL	P value
A
All	47	−17473.9418	48	−17472.7279	0.119
Cytosolic sites	47	−9174.2083	48	−9172.7565	0.088^a
Transmembrane sites	47	−8172.8663	48	−8172.8663	1.000
External sites	47	−2367.4868	48	−2367.4868	1.000
B
All	47	−17475.2612	48	−17473.9605	0.107
Cytosolic sites	47	−9176.0386	48	−9175.5231	0.310
Transmembrane sites	47	−8172.8663	48	−8172.4822	0.381
External sites	47	−2367.6301	48	−2367.6301	1.000

A: tests on lineages harboring P. falciparum and related parasites.

B: tests on lineages harboring any plasmodium parasites.

^a

See text for additional information regarding this comparison.